Experiment: 1-ethyl-3-methylimidazolium lysine 10.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01875 and AO353_01880 are separated by 288 nucleotides AO353_01880 and AO353_01885 are separated by 140 nucleotides AO353_01885 and AO353_01890 are separated by 223 nucleotides
AO353_01875: AO353_01875 - glycine/betaine ABC transporter substrate-binding protein, at 395,845 to 396,696
_01875
AO353_01880: AO353_01880 - beta (1-6) glucans synthase, at 396,985 to 398,580
_01880
AO353_01885: AO353_01885 - hypothetical protein, at 398,721 to 399,092
_01885
AO353_01890: AO353_01890 - serine/threonine protein kinase, at 399,316 to 400,614
_01890
Position (kb) 396
397
398
399 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 396.056 kb on + strand, within AO353_01875 at 396.206 kb on + strand, within AO353_01875 at 396.206 kb on + strand, within AO353_01875 at 396.206 kb on + strand, within AO353_01875 at 396.206 kb on + strand, within AO353_01875 at 396.206 kb on + strand, within AO353_01875 at 396.206 kb on + strand, within AO353_01875 at 396.206 kb on + strand, within AO353_01875 at 396.206 kb on + strand, within AO353_01875 at 396.207 kb on - strand, within AO353_01875 at 396.207 kb on - strand, within AO353_01875 at 396.207 kb on - strand, within AO353_01875 at 396.207 kb on - strand, within AO353_01875 at 396.207 kb on - strand, within AO353_01875 at 396.207 kb on - strand, within AO353_01875 at 396.207 kb on - strand, within AO353_01875 at 396.207 kb on - strand, within AO353_01875 at 396.221 kb on + strand, within AO353_01875 at 396.221 kb on + strand, within AO353_01875 at 396.222 kb on - strand, within AO353_01875 at 396.222 kb on - strand, within AO353_01875 at 396.283 kb on - strand, within AO353_01875 at 396.309 kb on + strand, within AO353_01875 at 396.309 kb on + strand, within AO353_01875 at 396.309 kb on + strand, within AO353_01875 at 396.309 kb on + strand, within AO353_01875 at 396.310 kb on - strand, within AO353_01875 at 396.310 kb on - strand, within AO353_01875 at 396.310 kb on - strand, within AO353_01875 at 396.339 kb on - strand, within AO353_01875 at 396.339 kb on - strand, within AO353_01875 at 396.479 kb on - strand, within AO353_01875 at 396.599 kb on + strand, within AO353_01875 at 396.599 kb on + strand, within AO353_01875 at 396.639 kb on + strand at 396.639 kb on + strand at 396.639 kb on + strand at 396.639 kb on + strand at 396.639 kb on + strand at 396.639 kb on + strand at 396.640 kb on - strand at 396.640 kb on - strand at 396.640 kb on - strand at 396.640 kb on - strand at 396.640 kb on - strand at 396.682 kb on + strand at 396.682 kb on + strand at 396.683 kb on - strand at 396.683 kb on - strand at 396.700 kb on + strand at 396.700 kb on + strand at 396.700 kb on + strand at 396.700 kb on + strand at 396.700 kb on + strand at 396.700 kb on + strand at 396.701 kb on - strand at 396.701 kb on - strand at 396.701 kb on - strand at 396.748 kb on + strand at 396.748 kb on + strand at 396.748 kb on + strand at 396.748 kb on + strand at 396.748 kb on + strand at 396.748 kb on + strand at 396.748 kb on + strand at 396.748 kb on + strand at 396.748 kb on + strand at 396.748 kb on + strand at 396.748 kb on + strand at 396.748 kb on + strand at 396.748 kb on + strand at 396.748 kb on + strand at 396.748 kb on + strand at 396.748 kb on + strand at 396.748 kb on + strand at 396.749 kb on - strand at 396.749 kb on - strand at 396.749 kb on - strand at 396.749 kb on - strand at 396.749 kb on - strand at 396.749 kb on - strand at 396.749 kb on - strand at 396.749 kb on - strand at 396.749 kb on - strand at 396.749 kb on - strand at 396.749 kb on - strand at 396.749 kb on - strand at 396.749 kb on - strand at 396.749 kb on - strand at 396.749 kb on - strand at 396.749 kb on - strand at 396.754 kb on + strand at 396.754 kb on + strand at 396.755 kb on - strand at 396.755 kb on - strand at 396.755 kb on - strand at 396.755 kb on - strand at 396.755 kb on - strand at 396.755 kb on - strand at 396.812 kb on + strand at 396.812 kb on + strand at 396.992 kb on + strand at 396.992 kb on + strand at 396.993 kb on - strand at 396.993 kb on - strand at 397.060 kb on + strand at 397.060 kb on + strand at 397.060 kb on + strand at 397.060 kb on + strand at 397.060 kb on + strand at 397.061 kb on - strand at 397.061 kb on - strand at 397.061 kb on - strand at 397.064 kb on + strand at 397.064 kb on + strand at 397.064 kb on + strand at 397.064 kb on + strand at 397.064 kb on + strand at 397.065 kb on - strand at 397.065 kb on - strand at 397.065 kb on - strand at 397.065 kb on - strand at 397.065 kb on - strand at 397.065 kb on - strand at 397.177 kb on + strand, within AO353_01880 at 397.177 kb on + strand, within AO353_01880 at 397.177 kb on + strand, within AO353_01880 at 397.177 kb on + strand, within AO353_01880 at 397.178 kb on - strand, within AO353_01880 at 397.178 kb on - strand, within AO353_01880 at 397.178 kb on - strand, within AO353_01880 at 397.291 kb on + strand, within AO353_01880 at 397.291 kb on + strand, within AO353_01880 at 397.292 kb on - strand, within AO353_01880 at 397.292 kb on - strand, within AO353_01880 at 397.457 kb on + strand, within AO353_01880 at 397.458 kb on - strand, within AO353_01880 at 397.458 kb on - strand, within AO353_01880 at 397.552 kb on + strand, within AO353_01880 at 397.552 kb on + strand, within AO353_01880 at 397.552 kb on + strand, within AO353_01880 at 397.553 kb on - strand, within AO353_01880 at 397.852 kb on + strand, within AO353_01880 at 397.852 kb on + strand, within AO353_01880 at 397.852 kb on + strand, within AO353_01880 at 397.852 kb on + strand, within AO353_01880 at 397.852 kb on + strand, within AO353_01880 at 397.852 kb on + strand, within AO353_01880 at 397.852 kb on + strand, within AO353_01880 at 397.852 kb on + strand, within AO353_01880 at 397.853 kb on - strand, within AO353_01880 at 397.853 kb on - strand, within AO353_01880 at 397.853 kb on - strand at 397.853 kb on - strand, within AO353_01880 at 397.955 kb on + strand, within AO353_01880 at 397.956 kb on - strand, within AO353_01880 at 398.058 kb on + strand, within AO353_01880 at 398.396 kb on - strand, within AO353_01880 at 398.396 kb on - strand, within AO353_01880 at 398.396 kb on - strand, within AO353_01880 at 398.396 kb on - strand, within AO353_01880 at 398.574 kb on + strand at 398.574 kb on + strand at 398.574 kb on + strand at 398.574 kb on + strand at 398.575 kb on - strand at 398.575 kb on - strand at 398.575 kb on - strand at 398.581 kb on + strand at 398.582 kb on - strand at 398.638 kb on + strand at 398.645 kb on + strand at 398.669 kb on + strand at 398.669 kb on + strand at 398.669 kb on + strand at 398.670 kb on - strand at 398.670 kb on - strand at 398.670 kb on - strand at 398.670 kb on - strand at 398.681 kb on - strand at 398.681 kb on - strand at 398.778 kb on + strand, within AO353_01885 at 398.795 kb on + strand, within AO353_01885 at 398.796 kb on - strand, within AO353_01885 at 398.797 kb on + strand, within AO353_01885 at 398.797 kb on + strand, within AO353_01885 at 398.797 kb on + strand, within AO353_01885 at 398.797 kb on + strand, within AO353_01885 at 398.797 kb on + strand, within AO353_01885 at 398.797 kb on + strand, within AO353_01885 at 398.797 kb on + strand, within AO353_01885 at 398.797 kb on + strand, within AO353_01885 at 398.797 kb on + strand, within AO353_01885 at 398.797 kb on + strand, within AO353_01885 at 398.797 kb on + strand, within AO353_01885 at 398.798 kb on - strand, within AO353_01885 at 398.798 kb on - strand, within AO353_01885 at 398.798 kb on - strand, within AO353_01885 at 398.798 kb on - strand, within AO353_01885 at 398.798 kb on - strand, within AO353_01885 at 398.798 kb on - strand, within AO353_01885 at 398.798 kb on - strand, within AO353_01885 at 398.798 kb on - strand, within AO353_01885 at 398.798 kb on - strand, within AO353_01885 at 398.798 kb on - strand, within AO353_01885 at 398.798 kb on - strand, within AO353_01885 at 398.798 kb on - strand, within AO353_01885 at 399.016 kb on + strand, within AO353_01885 at 399.016 kb on + strand, within AO353_01885 at 399.016 kb on + strand, within AO353_01885 at 399.017 kb on - strand, within AO353_01885 at 399.017 kb on - strand, within AO353_01885 at 399.017 kb on - strand, within AO353_01885 at 399.017 kb on - strand, within AO353_01885 at 399.017 kb on - strand, within AO353_01885 at 399.017 kb on - strand, within AO353_01885 at 399.017 kb on - strand, within AO353_01885 at 399.029 kb on - strand, within AO353_01885 at 399.029 kb on - strand, within AO353_01885 at 399.029 kb on - strand, within AO353_01885 at 399.068 kb on + strand at 399.068 kb on + strand at 399.068 kb on + strand at 399.069 kb on - strand at 399.069 kb on - strand at 399.069 kb on - strand at 399.128 kb on - strand at 399.128 kb on - strand at 399.144 kb on + strand at 399.144 kb on + strand at 399.193 kb on + strand at 399.193 kb on + strand at 399.193 kb on + strand at 399.193 kb on + strand at 399.193 kb on + strand at 399.193 kb on + strand at 399.194 kb on - strand at 399.194 kb on - strand at 399.271 kb on + strand at 399.271 kb on + strand at 399.272 kb on - strand at 399.292 kb on + strand at 399.292 kb on + strand at 399.292 kb on + strand at 399.293 kb on - strand at 399.293 kb on - strand at 399.293 kb on - strand at 399.293 kb on - strand at 399.293 kb on - strand at 399.302 kb on + strand at 399.303 kb on - strand at 399.311 kb on + strand at 399.311 kb on + strand at 399.311 kb on + strand at 399.311 kb on + strand at 399.311 kb on + strand at 399.311 kb on + strand at 399.312 kb on - strand at 399.312 kb on - strand at 399.312 kb on - strand at 399.312 kb on - strand at 399.312 kb on - strand at 399.312 kb on - strand at 399.312 kb on - strand at 399.312 kb on - strand at 399.403 kb on + strand at 399.403 kb on + strand at 399.403 kb on + strand at 399.403 kb on + strand at 399.404 kb on - strand at 399.505 kb on + strand, within AO353_01890 at 399.505 kb on + strand, within AO353_01890 at 399.505 kb on + strand, within AO353_01890 at 399.505 kb on + strand, within AO353_01890 at 399.506 kb on - strand, within AO353_01890 at 399.577 kb on + strand, within AO353_01890 at 399.577 kb on + strand, within AO353_01890 at 399.578 kb on - strand, within AO353_01890 at 399.578 kb on - strand, within AO353_01890 at 399.578 kb on - strand, within AO353_01890
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 10.5 mM remove 396,056 + AO353_01875 0.25 -1.1 396,206 + AO353_01875 0.42 +0.6 396,206 + AO353_01875 0.42 -0.3 396,206 + AO353_01875 0.42 -0.7 396,206 + AO353_01875 0.42 -0.8 396,206 + AO353_01875 0.42 +0.3 396,206 + AO353_01875 0.42 +0.6 396,206 + AO353_01875 0.42 -1.4 396,206 + AO353_01875 0.42 -0.7 396,207 - AO353_01875 0.42 -1.1 396,207 - AO353_01875 0.42 -0.8 396,207 - AO353_01875 0.42 -0.1 396,207 - AO353_01875 0.42 -0.5 396,207 - AO353_01875 0.42 -1.1 396,207 - AO353_01875 0.42 +0.5 396,207 - AO353_01875 0.42 +0.6 396,207 - AO353_01875 0.42 -0.8 396,221 + AO353_01875 0.44 -0.7 396,221 + AO353_01875 0.44 +0.5 396,222 - AO353_01875 0.44 -1.0 396,222 - AO353_01875 0.44 +1.3 396,283 - AO353_01875 0.51 -0.3 396,309 + AO353_01875 0.54 +1.3 396,309 + AO353_01875 0.54 +0.2 396,309 + AO353_01875 0.54 +0.9 396,309 + AO353_01875 0.54 -1.3 396,310 - AO353_01875 0.55 +0.6 396,310 - AO353_01875 0.55 +1.7 396,310 - AO353_01875 0.55 +1.6 396,339 - AO353_01875 0.58 -2.2 396,339 - AO353_01875 0.58 -0.1 396,479 - AO353_01875 0.74 +0.1 396,599 + AO353_01875 0.88 -0.4 396,599 + AO353_01875 0.88 +0.5 396,639 + -0.7 396,639 + -0.1 396,639 + +2.6 396,639 + -0.1 396,639 + +0.2 396,639 + -0.4 396,640 - -0.2 396,640 - -0.1 396,640 - -0.1 396,640 - +1.2 396,640 - -0.1 396,682 + -0.1 396,682 + -1.5 396,683 - -0.1 396,683 - +1.9 396,700 + -0.7 396,700 + +1.1 396,700 + -1.4 396,700 + +0.3 396,700 + -0.4 396,700 + +0.2 396,701 - -0.8 396,701 - -1.8 396,701 - +0.1 396,748 + -0.7 396,748 + -2.6 396,748 + +0.9 396,748 + -0.3 396,748 + -0.6 396,748 + -2.0 396,748 + +0.4 396,748 + -1.3 396,748 + +0.2 396,748 + +1.0 396,748 + -0.1 396,748 + -0.3 396,748 + +0.1 396,748 + -0.1 396,748 + -0.4 396,748 + +1.3 396,748 + -0.5 396,749 - +1.9 396,749 - +0.0 396,749 - -0.9 396,749 - +0.6 396,749 - +0.1 396,749 - +0.9 396,749 - -0.3 396,749 - +2.3 396,749 - -0.4 396,749 - +0.5 396,749 - +1.9 396,749 - -0.1 396,749 - +1.2 396,749 - +0.9 396,749 - -0.8 396,749 - -0.2 396,754 + -0.4 396,754 + -1.1 396,755 - +1.1 396,755 - +0.9 396,755 - +0.5 396,755 - -0.0 396,755 - -0.8 396,755 - +0.9 396,812 + -0.5 396,812 + +1.1 396,992 + +0.0 396,992 + -0.7 396,993 - -0.1 396,993 - +0.9 397,060 + -2.1 397,060 + -1.2 397,060 + -1.9 397,060 + +0.9 397,060 + +0.2 397,061 - -1.3 397,061 - -0.3 397,061 - -0.1 397,064 + +0.0 397,064 + -0.4 397,064 + -0.3 397,064 + +0.1 397,064 + +0.5 397,065 - -0.7 397,065 - -0.4 397,065 - -0.1 397,065 - -0.8 397,065 - -1.8 397,065 - +0.6 397,177 + AO353_01880 0.12 -2.0 397,177 + AO353_01880 0.12 -0.3 397,177 + AO353_01880 0.12 +0.1 397,177 + AO353_01880 0.12 -0.9 397,178 - AO353_01880 0.12 +0.3 397,178 - AO353_01880 0.12 -2.7 397,178 - AO353_01880 0.12 -0.2 397,291 + AO353_01880 0.19 +0.3 397,291 + AO353_01880 0.19 -0.9 397,292 - AO353_01880 0.19 -1.7 397,292 - AO353_01880 0.19 -1.9 397,457 + AO353_01880 0.30 +0.4 397,458 - AO353_01880 0.30 -0.7 397,458 - AO353_01880 0.30 -0.9 397,552 + AO353_01880 0.36 -0.1 397,552 + AO353_01880 0.36 -1.4 397,552 + AO353_01880 0.36 -0.3 397,553 - AO353_01880 0.36 -0.7 397,852 + AO353_01880 0.54 -0.3 397,852 + AO353_01880 0.54 -0.3 397,852 + AO353_01880 0.54 -1.3 397,852 + AO353_01880 0.54 -1.0 397,852 + AO353_01880 0.54 -1.2 397,852 + AO353_01880 0.54 -0.5 397,852 + AO353_01880 0.54 -0.4 397,852 + AO353_01880 0.54 -1.7 397,853 - AO353_01880 0.54 -0.9 397,853 - AO353_01880 0.54 -2.3 397,853 - -0.1 397,853 - AO353_01880 0.54 -0.8 397,955 + AO353_01880 0.61 -0.7 397,956 - AO353_01880 0.61 -1.4 398,058 + AO353_01880 0.67 -1.2 398,396 - AO353_01880 0.88 +0.3 398,396 - AO353_01880 0.88 -1.4 398,396 - AO353_01880 0.88 -1.6 398,396 - AO353_01880 0.88 -0.8 398,574 + -1.9 398,574 + +0.3 398,574 + +0.4 398,574 + -1.4 398,575 - +0.2 398,575 - -0.4 398,575 - +1.9 398,581 + -0.3 398,582 - +0.6 398,638 + +1.5 398,645 + +0.9 398,669 + +1.3 398,669 + +0.5 398,669 + -1.1 398,670 - +2.9 398,670 - +0.9 398,670 - -0.1 398,670 - +0.3 398,681 - -1.7 398,681 - -0.3 398,778 + AO353_01885 0.15 +0.3 398,795 + AO353_01885 0.20 -1.1 398,796 - AO353_01885 0.20 -0.7 398,797 + AO353_01885 0.20 -0.1 398,797 + AO353_01885 0.20 -0.1 398,797 + AO353_01885 0.20 -0.5 398,797 + AO353_01885 0.20 +1.3 398,797 + AO353_01885 0.20 -1.1 398,797 + AO353_01885 0.20 -1.4 398,797 + AO353_01885 0.20 -1.0 398,797 + AO353_01885 0.20 +0.9 398,797 + AO353_01885 0.20 +1.9 398,797 + AO353_01885 0.20 -2.6 398,797 + AO353_01885 0.20 +1.1 398,798 - AO353_01885 0.21 -1.2 398,798 - AO353_01885 0.21 -1.5 398,798 - AO353_01885 0.21 -2.3 398,798 - AO353_01885 0.21 -1.8 398,798 - AO353_01885 0.21 -0.7 398,798 - AO353_01885 0.21 -0.7 398,798 - AO353_01885 0.21 -0.6 398,798 - AO353_01885 0.21 +0.3 398,798 - AO353_01885 0.21 +0.9 398,798 - AO353_01885 0.21 +0.2 398,798 - AO353_01885 0.21 +0.5 398,798 - AO353_01885 0.21 -2.0 399,016 + AO353_01885 0.79 +0.9 399,016 + AO353_01885 0.79 -0.6 399,016 + AO353_01885 0.79 -0.6 399,017 - AO353_01885 0.80 -0.7 399,017 - AO353_01885 0.80 +0.5 399,017 - AO353_01885 0.80 -1.8 399,017 - AO353_01885 0.80 -0.2 399,017 - AO353_01885 0.80 -1.3 399,017 - AO353_01885 0.80 -0.7 399,017 - AO353_01885 0.80 +0.3 399,029 - AO353_01885 0.83 -2.3 399,029 - AO353_01885 0.83 -0.4 399,029 - AO353_01885 0.83 -0.4 399,068 + -0.7 399,068 + +0.2 399,068 + -1.1 399,069 - -1.1 399,069 - -1.4 399,069 - +0.1 399,128 - -0.9 399,128 - -0.1 399,144 + -2.1 399,144 + +0.0 399,193 + -0.1 399,193 + +1.5 399,193 + +0.9 399,193 + -0.1 399,193 + -1.4 399,193 + -0.7 399,194 - +0.2 399,194 - -0.1 399,271 + -1.1 399,271 + -1.6 399,272 - -1.9 399,292 + +1.9 399,292 + +1.3 399,292 + +0.7 399,293 - +0.0 399,293 - -1.2 399,293 - -1.1 399,293 - -1.4 399,293 - -0.6 399,302 + -1.1 399,303 - -0.3 399,311 + +0.9 399,311 + +0.6 399,311 + -0.7 399,311 + -0.1 399,311 + -2.7 399,311 + +0.5 399,312 - -1.3 399,312 - -1.9 399,312 - +0.3 399,312 - +0.9 399,312 - -0.3 399,312 - +0.4 399,312 - -2.6 399,312 - -0.1 399,403 + +0.9 399,403 + -1.4 399,403 + +1.2 399,403 + -0.9 399,404 - -0.2 399,505 + AO353_01890 0.15 +0.3 399,505 + AO353_01890 0.15 +0.6 399,505 + AO353_01890 0.15 +0.2 399,505 + AO353_01890 0.15 -0.8 399,506 - AO353_01890 0.15 -0.7 399,577 + AO353_01890 0.20 -0.1 399,577 + AO353_01890 0.20 -0.8 399,578 - AO353_01890 0.20 +0.2 399,578 - AO353_01890 0.20 +1.2 399,578 - AO353_01890 0.20 -0.3
Or see this region's nucleotide sequence