Experiment: 1-ethyl-3-methylimidazolium lysine 10.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01790 and AO353_01795 are separated by 160 nucleotides AO353_01795 and AO353_01800 are separated by 66 nucleotides AO353_01800 and AO353_01805 overlap by 1 nucleotides AO353_01805 and AO353_01810 are separated by 254 nucleotides
AO353_01790: AO353_01790 - thioesterase, at 376,275 to 376,751
_01790
AO353_01795: AO353_01795 - hypothetical protein, at 376,912 to 377,151
_01795
AO353_01800: AO353_01800 - hypothetical protein, at 377,218 to 377,619
_01800
AO353_01805: AO353_01805 - hypothetical protein, at 377,619 to 378,356
_01805
AO353_01810: AO353_01810 - branched-chain amino acid ABC transporter substrate-binding protein, at 378,611 to 379,924
_01810
Position (kb) 377
378
379 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 376.631 kb on - strand, within AO353_01790 at 376.658 kb on + strand, within AO353_01790 at 376.658 kb on + strand, within AO353_01790 at 376.658 kb on + strand, within AO353_01790 at 376.658 kb on + strand, within AO353_01790 at 376.659 kb on - strand, within AO353_01790 at 376.659 kb on - strand, within AO353_01790 at 376.659 kb on - strand, within AO353_01790 at 376.659 kb on - strand, within AO353_01790 at 376.659 kb on - strand, within AO353_01790 at 376.677 kb on + strand, within AO353_01790 at 376.678 kb on - strand, within AO353_01790 at 376.769 kb on + strand at 376.770 kb on - strand at 376.770 kb on - strand at 376.791 kb on - strand at 376.816 kb on - strand at 376.819 kb on + strand at 376.820 kb on - strand at 376.826 kb on + strand at 376.826 kb on + strand at 376.828 kb on + strand at 376.828 kb on + strand at 376.828 kb on + strand at 376.828 kb on + strand at 376.828 kb on + strand at 376.828 kb on + strand at 376.829 kb on - strand at 376.829 kb on - strand at 376.829 kb on - strand at 376.829 kb on - strand at 376.829 kb on - strand at 376.829 kb on - strand at 376.829 kb on - strand at 376.830 kb on + strand at 376.830 kb on + strand at 376.830 kb on + strand at 376.831 kb on - strand at 376.831 kb on - strand at 376.831 kb on - strand at 376.836 kb on + strand at 376.852 kb on + strand at 376.852 kb on + strand at 376.853 kb on - strand at 376.883 kb on + strand at 376.883 kb on + strand at 376.883 kb on + strand at 376.884 kb on - strand at 376.884 kb on - strand at 376.884 kb on - strand at 376.884 kb on - strand at 376.884 kb on - strand at 376.884 kb on - strand at 376.884 kb on - strand at 376.887 kb on + strand at 376.887 kb on + strand at 376.917 kb on + strand at 376.918 kb on - strand at 376.925 kb on + strand at 376.925 kb on + strand at 376.925 kb on + strand at 376.925 kb on + strand at 376.925 kb on + strand at 376.925 kb on + strand at 376.925 kb on + strand at 376.925 kb on + strand at 376.926 kb on - strand at 376.926 kb on - strand at 376.926 kb on - strand at 376.926 kb on - strand at 376.929 kb on + strand at 376.930 kb on - strand at 377.052 kb on + strand, within AO353_01795 at 377.052 kb on + strand, within AO353_01795 at 377.102 kb on + strand, within AO353_01795 at 377.103 kb on - strand, within AO353_01795 at 377.121 kb on + strand, within AO353_01795 at 377.121 kb on + strand, within AO353_01795 at 377.121 kb on + strand, within AO353_01795 at 377.140 kb on - strand at 377.149 kb on + strand at 377.149 kb on + strand at 377.150 kb on - strand at 377.170 kb on + strand at 377.170 kb on + strand at 377.170 kb on + strand at 377.171 kb on - strand at 377.171 kb on - strand at 377.171 kb on - strand at 377.174 kb on - strand at 377.196 kb on + strand at 377.197 kb on - strand at 377.211 kb on + strand at 377.247 kb on + strand at 377.248 kb on - strand at 377.248 kb on - strand at 377.248 kb on - strand at 377.321 kb on + strand, within AO353_01800 at 377.322 kb on - strand, within AO353_01800 at 377.333 kb on + strand, within AO353_01800 at 377.333 kb on + strand, within AO353_01800 at 377.333 kb on + strand, within AO353_01800 at 377.333 kb on + strand, within AO353_01800 at 377.333 kb on + strand, within AO353_01800 at 377.334 kb on - strand, within AO353_01800 at 377.334 kb on - strand, within AO353_01800 at 377.334 kb on - strand, within AO353_01800 at 377.334 kb on - strand, within AO353_01800 at 377.334 kb on - strand, within AO353_01800 at 377.334 kb on - strand, within AO353_01800 at 377.334 kb on - strand, within AO353_01800 at 377.525 kb on + strand, within AO353_01800 at 377.525 kb on + strand, within AO353_01800 at 377.525 kb on + strand, within AO353_01800 at 377.526 kb on - strand, within AO353_01800 at 377.526 kb on - strand, within AO353_01800 at 377.573 kb on + strand, within AO353_01800 at 377.573 kb on + strand, within AO353_01800 at 377.573 kb on + strand, within AO353_01800 at 377.574 kb on - strand, within AO353_01800 at 377.574 kb on - strand, within AO353_01800 at 377.592 kb on + strand at 377.592 kb on + strand at 377.592 kb on + strand at 377.593 kb on - strand at 377.613 kb on + strand at 377.613 kb on + strand at 377.613 kb on + strand at 377.614 kb on - strand at 377.614 kb on - strand at 377.614 kb on - strand at 377.614 kb on - strand at 377.614 kb on - strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.676 kb on + strand at 377.676 kb on + strand at 377.676 kb on + strand at 377.676 kb on + strand at 377.676 kb on + strand at 377.676 kb on + strand at 377.677 kb on - strand at 377.677 kb on - strand at 377.710 kb on - strand, within AO353_01805 at 377.791 kb on + strand, within AO353_01805 at 377.791 kb on + strand, within AO353_01805 at 377.791 kb on + strand, within AO353_01805 at 377.792 kb on - strand, within AO353_01805 at 377.792 kb on - strand, within AO353_01805 at 377.794 kb on + strand, within AO353_01805 at 377.795 kb on - strand, within AO353_01805 at 377.795 kb on - strand, within AO353_01805 at 377.938 kb on + strand, within AO353_01805 at 377.938 kb on + strand, within AO353_01805 at 377.938 kb on + strand, within AO353_01805 at 377.938 kb on + strand, within AO353_01805 at 377.938 kb on + strand, within AO353_01805 at 377.939 kb on - strand, within AO353_01805 at 377.939 kb on - strand, within AO353_01805 at 377.939 kb on - strand, within AO353_01805 at 377.974 kb on + strand, within AO353_01805 at 377.975 kb on - strand, within AO353_01805 at 378.057 kb on + strand, within AO353_01805 at 378.099 kb on - strand, within AO353_01805 at 378.272 kb on + strand, within AO353_01805 at 378.272 kb on + strand, within AO353_01805 at 378.286 kb on + strand at 378.286 kb on + strand at 378.302 kb on + strand at 378.302 kb on + strand at 378.303 kb on - strand at 378.303 kb on - strand at 378.303 kb on - strand at 378.303 kb on - strand at 378.326 kb on + strand at 378.326 kb on + strand at 378.327 kb on - strand at 378.327 kb on - strand at 378.327 kb on - strand at 378.369 kb on + strand at 378.395 kb on - strand at 378.450 kb on + strand at 378.450 kb on + strand at 378.450 kb on + strand at 378.450 kb on + strand at 378.450 kb on + strand at 378.450 kb on + strand at 378.450 kb on + strand at 378.450 kb on + strand at 378.450 kb on + strand at 378.450 kb on + strand at 378.450 kb on + strand at 378.450 kb on + strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.480 kb on + strand at 378.480 kb on + strand at 378.480 kb on + strand at 378.480 kb on + strand at 378.480 kb on + strand at 378.480 kb on + strand at 378.480 kb on + strand at 378.480 kb on + strand at 378.481 kb on - strand at 378.481 kb on - strand at 378.481 kb on - strand at 378.481 kb on - strand at 378.486 kb on + strand at 378.486 kb on + strand at 378.486 kb on + strand at 378.487 kb on - strand at 378.557 kb on + strand at 378.557 kb on + strand at 378.558 kb on - strand at 378.987 kb on + strand, within AO353_01810 at 378.987 kb on + strand, within AO353_01810 at 378.987 kb on + strand, within AO353_01810 at 378.988 kb on - strand, within AO353_01810 at 378.988 kb on - strand, within AO353_01810 at 378.988 kb on - strand, within AO353_01810 at 379.014 kb on + strand, within AO353_01810 at 379.014 kb on + strand, within AO353_01810 at 379.015 kb on - strand, within AO353_01810 at 379.015 kb on - strand, within AO353_01810 at 379.119 kb on + strand, within AO353_01810 at 379.119 kb on + strand, within AO353_01810 at 379.119 kb on + strand, within AO353_01810 at 379.119 kb on + strand, within AO353_01810 at 379.119 kb on + strand, within AO353_01810 at 379.119 kb on + strand, within AO353_01810 at 379.120 kb on - strand, within AO353_01810 at 379.120 kb on - strand, within AO353_01810 at 379.120 kb on - strand, within AO353_01810 at 379.120 kb on - strand, within AO353_01810 at 379.120 kb on - strand, within AO353_01810 at 379.120 kb on - strand, within AO353_01810 at 379.120 kb on - strand, within AO353_01810 at 379.120 kb on - strand, within AO353_01810 at 379.120 kb on - strand, within AO353_01810 at 379.120 kb on - strand, within AO353_01810 at 379.148 kb on - strand, within AO353_01810 at 379.148 kb on - strand, within AO353_01810 at 379.200 kb on + strand, within AO353_01810 at 379.200 kb on + strand, within AO353_01810 at 379.200 kb on + strand, within AO353_01810 at 379.200 kb on + strand, within AO353_01810 at 379.200 kb on + strand, within AO353_01810 at 379.201 kb on - strand, within AO353_01810 at 379.201 kb on - strand, within AO353_01810 at 379.201 kb on - strand, within AO353_01810 at 379.347 kb on + strand, within AO353_01810 at 379.347 kb on + strand, within AO353_01810
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 10.5 mM remove 376,631 - AO353_01790 0.75 +0.7 376,658 + AO353_01790 0.80 -0.9 376,658 + AO353_01790 0.80 -0.3 376,658 + AO353_01790 0.80 -0.7 376,658 + AO353_01790 0.80 +0.9 376,659 - AO353_01790 0.81 +0.0 376,659 - AO353_01790 0.81 +0.9 376,659 - AO353_01790 0.81 -0.5 376,659 - AO353_01790 0.81 +1.9 376,659 - AO353_01790 0.81 -0.9 376,677 + AO353_01790 0.84 -0.2 376,678 - AO353_01790 0.84 +2.6 376,769 + +0.6 376,770 - -0.9 376,770 - -0.1 376,791 - +0.9 376,816 - +0.1 376,819 + +0.2 376,820 - +1.9 376,826 + -0.4 376,826 + +0.3 376,828 + +2.5 376,828 + +0.6 376,828 + +0.0 376,828 + -0.2 376,828 + +1.4 376,828 + +0.3 376,829 - -0.7 376,829 - -1.0 376,829 - +0.7 376,829 - -0.4 376,829 - +0.6 376,829 - -1.7 376,829 - -0.4 376,830 + -1.1 376,830 + +1.0 376,830 + -0.4 376,831 - -0.5 376,831 - -1.7 376,831 - +1.1 376,836 + +0.9 376,852 + +0.7 376,852 + -0.1 376,853 - +0.3 376,883 + +0.5 376,883 + -0.3 376,883 + -1.2 376,884 - -1.9 376,884 - +0.3 376,884 - -1.7 376,884 - +0.9 376,884 - -0.1 376,884 - +0.9 376,884 - -0.8 376,887 + -1.4 376,887 + +0.9 376,917 + +0.6 376,918 - -2.0 376,925 + +0.9 376,925 + -0.1 376,925 + -1.1 376,925 + +0.5 376,925 + +0.6 376,925 + -2.4 376,925 + +1.2 376,925 + -0.1 376,926 - -0.3 376,926 - -0.9 376,926 - -0.6 376,926 - -0.9 376,929 + +0.2 376,930 - -0.5 377,052 + AO353_01795 0.58 +0.3 377,052 + AO353_01795 0.58 -1.1 377,102 + AO353_01795 0.79 -0.1 377,103 - AO353_01795 0.80 +0.2 377,121 + AO353_01795 0.87 -1.7 377,121 + AO353_01795 0.87 +2.5 377,121 + AO353_01795 0.87 -0.3 377,140 - +0.9 377,149 + +0.3 377,149 + -0.1 377,150 - +0.0 377,170 + +2.2 377,170 + -0.4 377,170 + -1.4 377,171 - -0.8 377,171 - -0.1 377,171 - +0.5 377,174 - +0.9 377,196 + -1.1 377,197 - +0.1 377,211 + -0.5 377,247 + -1.2 377,248 - +0.0 377,248 - -0.1 377,248 - +2.5 377,321 + AO353_01800 0.26 +0.9 377,322 - AO353_01800 0.26 -0.6 377,333 + AO353_01800 0.29 +1.9 377,333 + AO353_01800 0.29 +0.9 377,333 + AO353_01800 0.29 -0.9 377,333 + AO353_01800 0.29 +0.6 377,333 + AO353_01800 0.29 +2.2 377,334 - AO353_01800 0.29 -1.0 377,334 - AO353_01800 0.29 -1.2 377,334 - AO353_01800 0.29 -1.9 377,334 - AO353_01800 0.29 -2.1 377,334 - AO353_01800 0.29 +0.9 377,334 - AO353_01800 0.29 -0.4 377,334 - AO353_01800 0.29 -1.1 377,525 + AO353_01800 0.76 -0.1 377,525 + AO353_01800 0.76 +0.6 377,525 + AO353_01800 0.76 -1.9 377,526 - AO353_01800 0.77 -0.1 377,526 - AO353_01800 0.77 +0.9 377,573 + AO353_01800 0.88 -0.1 377,573 + AO353_01800 0.88 -2.7 377,573 + AO353_01800 0.88 -1.6 377,574 - AO353_01800 0.89 +0.1 377,574 - AO353_01800 0.89 +0.0 377,592 + -0.8 377,592 + -1.4 377,592 + -0.7 377,593 - +0.1 377,613 + -0.7 377,613 + -3.5 377,613 + -0.8 377,614 - -0.7 377,614 - -0.3 377,614 - -0.1 377,614 - -0.5 377,614 - +1.4 377,668 + -0.1 377,668 + -0.8 377,668 + -0.7 377,668 + -0.4 377,668 + -1.2 377,668 + +0.9 377,668 + -0.7 377,668 + -2.3 377,668 + -0.3 377,668 + -1.8 377,668 + -1.1 377,668 + -1.3 377,669 - -1.4 377,669 - -0.7 377,669 - -1.8 377,669 - +0.0 377,669 - +1.9 377,669 - +0.5 377,669 - -1.7 377,669 - -2.6 377,669 - -1.7 377,669 - -2.1 377,669 - -0.8 377,669 - -1.0 377,669 - -1.1 377,669 - -0.9 377,669 - -1.0 377,669 - +0.2 377,669 - -0.7 377,669 - -0.7 377,676 + +1.2 377,676 + -1.9 377,676 + -0.1 377,676 + +0.9 377,676 + +0.9 377,676 + -1.6 377,677 - -0.7 377,677 - -1.4 377,710 - AO353_01805 0.12 -1.1 377,791 + AO353_01805 0.23 +0.3 377,791 + AO353_01805 0.23 -0.7 377,791 + AO353_01805 0.23 -1.9 377,792 - AO353_01805 0.23 -0.1 377,792 - AO353_01805 0.23 -0.5 377,794 + AO353_01805 0.24 -1.4 377,795 - AO353_01805 0.24 -1.1 377,795 - AO353_01805 0.24 -0.5 377,938 + AO353_01805 0.43 -1.3 377,938 + AO353_01805 0.43 -1.6 377,938 + AO353_01805 0.43 -1.7 377,938 + AO353_01805 0.43 +0.3 377,938 + AO353_01805 0.43 -0.1 377,939 - AO353_01805 0.43 -0.7 377,939 - AO353_01805 0.43 -1.4 377,939 - AO353_01805 0.43 -1.7 377,974 + AO353_01805 0.48 -1.4 377,975 - AO353_01805 0.48 -1.9 378,057 + AO353_01805 0.59 -1.4 378,099 - AO353_01805 0.65 +1.9 378,272 + AO353_01805 0.88 -0.7 378,272 + AO353_01805 0.88 -1.3 378,286 + +0.0 378,286 + +0.9 378,302 + -2.1 378,302 + -1.0 378,303 - -2.3 378,303 - -0.1 378,303 - -1.7 378,303 - -1.7 378,326 + -0.7 378,326 + -1.1 378,327 - -0.3 378,327 - -0.1 378,327 - -0.7 378,369 + -0.9 378,395 - +0.5 378,450 + +1.9 378,450 + +0.0 378,450 + +0.9 378,450 + -1.1 378,450 + +0.3 378,450 + -2.3 378,450 + -0.9 378,450 + -1.4 378,450 + -1.4 378,450 + -3.0 378,450 + -1.4 378,450 + +1.6 378,451 - -1.7 378,451 - -0.4 378,451 - +1.6 378,451 - -1.0 378,451 - -0.1 378,451 - +0.3 378,451 - -0.7 378,451 - -0.4 378,451 - -1.7 378,451 - -0.2 378,451 - +0.4 378,451 - -1.2 378,451 - +0.5 378,451 - +0.7 378,451 - -0.4 378,451 - -1.4 378,480 + -0.1 378,480 + -0.2 378,480 + -0.2 378,480 + -1.1 378,480 + -2.1 378,480 + -0.6 378,480 + -0.2 378,480 + -0.7 378,481 - -1.4 378,481 - +0.2 378,481 - -1.9 378,481 - -0.1 378,486 + -2.8 378,486 + -0.1 378,486 + -1.6 378,487 - +0.9 378,557 + -0.3 378,557 + +0.9 378,558 - -1.7 378,987 + AO353_01810 0.29 +0.3 378,987 + AO353_01810 0.29 -1.2 378,987 + AO353_01810 0.29 -0.5 378,988 - AO353_01810 0.29 +0.9 378,988 - AO353_01810 0.29 +1.6 378,988 - AO353_01810 0.29 -0.7 379,014 + AO353_01810 0.31 -1.1 379,014 + AO353_01810 0.31 -0.3 379,015 - AO353_01810 0.31 -0.2 379,015 - AO353_01810 0.31 +0.4 379,119 + AO353_01810 0.39 -0.4 379,119 + AO353_01810 0.39 -0.7 379,119 + AO353_01810 0.39 +0.3 379,119 + AO353_01810 0.39 -1.4 379,119 + AO353_01810 0.39 +0.0 379,119 + AO353_01810 0.39 +1.9 379,120 - AO353_01810 0.39 -1.9 379,120 - AO353_01810 0.39 -0.4 379,120 - AO353_01810 0.39 +1.9 379,120 - AO353_01810 0.39 +0.9 379,120 - AO353_01810 0.39 +0.3 379,120 - AO353_01810 0.39 -1.4 379,120 - AO353_01810 0.39 -0.6 379,120 - AO353_01810 0.39 +1.2 379,120 - AO353_01810 0.39 -0.1 379,120 - AO353_01810 0.39 +0.6 379,148 - AO353_01810 0.41 -0.3 379,148 - AO353_01810 0.41 -0.5 379,200 + AO353_01810 0.45 -1.1 379,200 + AO353_01810 0.45 +0.3 379,200 + AO353_01810 0.45 -1.2 379,200 + AO353_01810 0.45 +0.9 379,200 + AO353_01810 0.45 +1.0 379,201 - AO353_01810 0.45 -0.4 379,201 - AO353_01810 0.45 +0.9 379,201 - AO353_01810 0.45 -0.9 379,347 + AO353_01810 0.56 -0.1 379,347 + AO353_01810 0.56 +0.5
Or see this region's nucleotide sequence