Experiment: Aluminum chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3730 and Shewana3_3731 are separated by 44 nucleotides Shewana3_3731 and Shewana3_3732 overlap by 1 nucleotides Shewana3_3732 and Shewana3_3733 overlap by 8 nucleotides
Shewana3_3730: Shewana3_3730 - Sec-independent protein translocase TatC (RefSeq), at 4,471,915 to 4,472,664
_3730
Shewana3_3731: Shewana3_3731 - hypothetical protein (RefSeq), at 4,472,709 to 4,473,239
_3731
Shewana3_3732: Shewana3_3732 - Sec-independent protein translocase TatD (RefSeq), at 4,473,239 to 4,474,042
_3732
Shewana3_3733: Shewana3_3733 - diguanylate cyclase (RefSeq), at 4,474,035 to 4,475,912
_3733
Position (kb)
4473
4474
4475 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4472.257 kb on - strand, within Shewana3_3730 at 4472.465 kb on - strand, within Shewana3_3730 at 4472.547 kb on + strand, within Shewana3_3730 at 4472.736 kb on + strand at 4472.736 kb on + strand at 4472.744 kb on - strand at 4472.756 kb on + strand at 4472.756 kb on + strand at 4472.764 kb on - strand, within Shewana3_3731 at 4472.892 kb on + strand, within Shewana3_3731 at 4472.939 kb on - strand, within Shewana3_3731 at 4472.959 kb on - strand, within Shewana3_3731 at 4472.969 kb on - strand, within Shewana3_3731 at 4473.208 kb on + strand at 4473.215 kb on + strand at 4473.465 kb on + strand, within Shewana3_3732 at 4473.533 kb on + strand, within Shewana3_3732 at 4473.583 kb on - strand, within Shewana3_3732 at 4473.861 kb on + strand, within Shewana3_3732 at 4473.870 kb on - strand, within Shewana3_3732 at 4473.882 kb on + strand, within Shewana3_3732 at 4474.126 kb on + strand at 4474.177 kb on - strand at 4474.195 kb on - strand at 4474.214 kb on + strand at 4474.216 kb on - strand at 4474.294 kb on - strand, within Shewana3_3733 at 4474.348 kb on + strand, within Shewana3_3733 at 4474.390 kb on + strand, within Shewana3_3733 at 4474.390 kb on - strand, within Shewana3_3733 at 4474.410 kb on - strand, within Shewana3_3733 at 4474.591 kb on + strand, within Shewana3_3733 at 4474.681 kb on + strand, within Shewana3_3733 at 4474.766 kb on - strand, within Shewana3_3733 at 4474.791 kb on + strand, within Shewana3_3733 at 4474.938 kb on - strand, within Shewana3_3733 at 4474.948 kb on - strand, within Shewana3_3733 at 4474.965 kb on + strand, within Shewana3_3733 at 4475.033 kb on + strand, within Shewana3_3733
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM remove 4,472,257 - Shewana3_3730 0.46 -0.9 4,472,465 - Shewana3_3730 0.73 -0.7 4,472,547 + Shewana3_3730 0.84 -0.4 4,472,736 + -0.4 4,472,736 + -0.1 4,472,744 - +0.7 4,472,756 + -0.4 4,472,756 + -0.4 4,472,764 - Shewana3_3731 0.10 +1.2 4,472,892 + Shewana3_3731 0.34 -0.4 4,472,939 - Shewana3_3731 0.43 +1.2 4,472,959 - Shewana3_3731 0.47 -0.4 4,472,969 - Shewana3_3731 0.49 -1.0 4,473,208 + -0.3 4,473,215 + -0.1 4,473,465 + Shewana3_3732 0.28 +0.1 4,473,533 + Shewana3_3732 0.37 +0.1 4,473,583 - Shewana3_3732 0.43 +1.7 4,473,861 + Shewana3_3732 0.77 -2.1 4,473,870 - Shewana3_3732 0.78 +0.7 4,473,882 + Shewana3_3732 0.80 -0.5 4,474,126 + -0.6 4,474,177 - +2.5 4,474,195 - +2.2 4,474,214 + -0.3 4,474,216 - +0.1 4,474,294 - Shewana3_3733 0.14 +1.9 4,474,348 + Shewana3_3733 0.17 -0.9 4,474,390 + Shewana3_3733 0.19 +1.5 4,474,390 - Shewana3_3733 0.19 -0.6 4,474,410 - Shewana3_3733 0.20 -0.0 4,474,591 + Shewana3_3733 0.30 -0.7 4,474,681 + Shewana3_3733 0.34 -0.4 4,474,766 - Shewana3_3733 0.39 +1.2 4,474,791 + Shewana3_3733 0.40 +1.2 4,474,938 - Shewana3_3733 0.48 +0.2 4,474,948 - Shewana3_3733 0.49 +1.2 4,474,965 + Shewana3_3733 0.50 +1.2 4,475,033 + Shewana3_3733 0.53 -0.6
Or see this region's nucleotide sequence