Experiment: Aluminum chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3514 and Shewana3_3515 are separated by 139 nucleotides Shewana3_3515 and Shewana3_3516 overlap by 4 nucleotides
Shewana3_3514: Shewana3_3514 - gamma-glutamyltransferase 2 (RefSeq), at 4,214,168 to 4,215,880
_3514
Shewana3_3515: Shewana3_3515 - ABC transporter related (RefSeq), at 4,216,020 to 4,217,069
_3515
Shewana3_3516: Shewana3_3516 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 4,217,066 to 4,218,700
_3516
Position (kb)
4216
4217
4218 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4215.079 kb on - strand, within Shewana3_3514 at 4215.106 kb on + strand, within Shewana3_3514 at 4215.111 kb on - strand, within Shewana3_3514 at 4215.114 kb on - strand, within Shewana3_3514 at 4215.525 kb on + strand, within Shewana3_3514 at 4215.585 kb on + strand, within Shewana3_3514 at 4215.763 kb on + strand at 4215.771 kb on - strand at 4215.782 kb on + strand at 4215.896 kb on + strand at 4215.964 kb on - strand at 4216.034 kb on + strand at 4216.042 kb on - strand at 4216.189 kb on + strand, within Shewana3_3515 at 4216.322 kb on - strand, within Shewana3_3515 at 4216.401 kb on - strand, within Shewana3_3515 at 4216.432 kb on - strand, within Shewana3_3515 at 4216.434 kb on - strand, within Shewana3_3515 at 4216.460 kb on - strand, within Shewana3_3515 at 4216.515 kb on - strand, within Shewana3_3515 at 4216.633 kb on + strand, within Shewana3_3515 at 4216.669 kb on - strand, within Shewana3_3515 at 4216.726 kb on + strand, within Shewana3_3515 at 4216.734 kb on - strand, within Shewana3_3515 at 4216.924 kb on + strand, within Shewana3_3515 at 4216.965 kb on - strand at 4216.982 kb on - strand at 4217.316 kb on - strand, within Shewana3_3516 at 4217.336 kb on + strand, within Shewana3_3516 at 4217.344 kb on - strand, within Shewana3_3516 at 4217.344 kb on - strand, within Shewana3_3516 at 4217.349 kb on - strand, within Shewana3_3516 at 4217.366 kb on - strand, within Shewana3_3516 at 4217.371 kb on - strand, within Shewana3_3516 at 4217.393 kb on + strand, within Shewana3_3516 at 4217.418 kb on + strand, within Shewana3_3516 at 4217.484 kb on - strand, within Shewana3_3516 at 4217.533 kb on + strand, within Shewana3_3516 at 4217.541 kb on - strand, within Shewana3_3516 at 4217.541 kb on - strand, within Shewana3_3516 at 4217.558 kb on + strand, within Shewana3_3516 at 4217.568 kb on - strand, within Shewana3_3516 at 4217.571 kb on - strand, within Shewana3_3516 at 4217.578 kb on + strand, within Shewana3_3516 at 4217.623 kb on + strand, within Shewana3_3516 at 4217.631 kb on - strand, within Shewana3_3516 at 4217.631 kb on - strand, within Shewana3_3516 at 4217.744 kb on - strand, within Shewana3_3516 at 4218.015 kb on - strand, within Shewana3_3516 at 4218.029 kb on + strand, within Shewana3_3516 at 4218.029 kb on + strand, within Shewana3_3516 at 4218.029 kb on + strand, within Shewana3_3516 at 4218.032 kb on - strand, within Shewana3_3516 at 4218.037 kb on - strand, within Shewana3_3516
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM remove 4,215,079 - Shewana3_3514 0.53 -0.5 4,215,106 + Shewana3_3514 0.55 -0.9 4,215,111 - Shewana3_3514 0.55 -0.4 4,215,114 - Shewana3_3514 0.55 -0.9 4,215,525 + Shewana3_3514 0.79 -0.4 4,215,585 + Shewana3_3514 0.83 -0.3 4,215,763 + -0.1 4,215,771 - +0.0 4,215,782 + -1.9 4,215,896 + -0.4 4,215,964 - -0.0 4,216,034 + +0.4 4,216,042 - -0.4 4,216,189 + Shewana3_3515 0.16 -0.1 4,216,322 - Shewana3_3515 0.29 +0.3 4,216,401 - Shewana3_3515 0.36 -0.2 4,216,432 - Shewana3_3515 0.39 -0.4 4,216,434 - Shewana3_3515 0.39 -0.1 4,216,460 - Shewana3_3515 0.42 -0.2 4,216,515 - Shewana3_3515 0.47 -0.1 4,216,633 + Shewana3_3515 0.58 -0.7 4,216,669 - Shewana3_3515 0.62 +0.0 4,216,726 + Shewana3_3515 0.67 +0.2 4,216,734 - Shewana3_3515 0.68 +0.2 4,216,924 + Shewana3_3515 0.86 -0.3 4,216,965 - -0.1 4,216,982 - -0.3 4,217,316 - Shewana3_3516 0.15 -0.2 4,217,336 + Shewana3_3516 0.17 -0.1 4,217,344 - Shewana3_3516 0.17 -0.2 4,217,344 - Shewana3_3516 0.17 +2.7 4,217,349 - Shewana3_3516 0.17 -0.8 4,217,366 - Shewana3_3516 0.18 +0.0 4,217,371 - Shewana3_3516 0.19 +0.8 4,217,393 + Shewana3_3516 0.20 -0.3 4,217,418 + Shewana3_3516 0.22 -0.3 4,217,484 - Shewana3_3516 0.26 -0.8 4,217,533 + Shewana3_3516 0.29 +0.1 4,217,541 - Shewana3_3516 0.29 -0.5 4,217,541 - Shewana3_3516 0.29 -0.5 4,217,558 + Shewana3_3516 0.30 -0.6 4,217,568 - Shewana3_3516 0.31 -0.1 4,217,571 - Shewana3_3516 0.31 -0.1 4,217,578 + Shewana3_3516 0.31 -0.8 4,217,623 + Shewana3_3516 0.34 -0.1 4,217,631 - Shewana3_3516 0.35 -0.5 4,217,631 - Shewana3_3516 0.35 -0.1 4,217,744 - Shewana3_3516 0.41 +0.3 4,218,015 - Shewana3_3516 0.58 +0.6 4,218,029 + Shewana3_3516 0.59 -0.0 4,218,029 + Shewana3_3516 0.59 -0.2 4,218,029 + Shewana3_3516 0.59 -0.9 4,218,032 - Shewana3_3516 0.59 -1.4 4,218,037 - Shewana3_3516 0.59 -0.0
Or see this region's nucleotide sequence