Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3473

Experiment: Aluminum chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3472 and Shewana3_3473 are separated by 465 nucleotidesShewana3_3473 and Shewana3_3474 are separated by 245 nucleotides Shewana3_3472: Shewana3_3472 - TonB-dependent siderophore receptor (RefSeq), at 4,163,810 to 4,165,771 _3472 Shewana3_3473: Shewana3_3473 - hypothetical protein (RefSeq), at 4,166,237 to 4,166,905 _3473 Shewana3_3474: Shewana3_3474 - hypothetical protein (RefSeq), at 4,167,151 to 4,168,587 _3474 Position (kb) 4166 4167Strain fitness (log2 ratio) -2 -1 0 1 2at 4165.277 kb on - strand, within Shewana3_3472at 4165.334 kb on - strand, within Shewana3_3472at 4165.344 kb on - strand, within Shewana3_3472at 4165.396 kb on + strand, within Shewana3_3472at 4165.500 kb on + strand, within Shewana3_3472at 4165.627 kb on - strandat 4165.927 kb on + strandat 4166.015 kb on + strandat 4166.162 kb on + strandat 4166.170 kb on - strandat 4166.318 kb on - strand, within Shewana3_3473at 4166.504 kb on + strand, within Shewana3_3473at 4166.547 kb on + strand, within Shewana3_3473at 4166.616 kb on - strand, within Shewana3_3473at 4166.622 kb on + strand, within Shewana3_3473at 4166.772 kb on - strand, within Shewana3_3473at 4166.804 kb on + strand, within Shewana3_3473at 4166.869 kb on + strandat 4166.869 kb on + strandat 4166.877 kb on - strandat 4166.887 kb on - strandat 4167.213 kb on + strandat 4167.335 kb on - strand, within Shewana3_3474at 4167.780 kb on - strand, within Shewana3_3474

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
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4,165,277 - Shewana3_3472 0.75 -0.1
4,165,334 - Shewana3_3472 0.78 -0.9
4,165,344 - Shewana3_3472 0.78 -0.9
4,165,396 + Shewana3_3472 0.81 +2.1
4,165,500 + Shewana3_3472 0.86 -0.6
4,165,627 - -0.2
4,165,927 + -0.3
4,166,015 + -0.1
4,166,162 + +2.1
4,166,170 - -0.0
4,166,318 - Shewana3_3473 0.12 -0.4
4,166,504 + Shewana3_3473 0.40 +1.1
4,166,547 + Shewana3_3473 0.46 +0.1
4,166,616 - Shewana3_3473 0.57 +0.0
4,166,622 + Shewana3_3473 0.58 +1.1
4,166,772 - Shewana3_3473 0.80 -2.4
4,166,804 + Shewana3_3473 0.85 +1.2
4,166,869 + -0.5
4,166,869 + -0.6
4,166,877 - -0.3
4,166,887 - -0.3
4,167,213 + -0.7
4,167,335 - Shewana3_3474 0.13 +0.2
4,167,780 - Shewana3_3474 0.44 -0.1

Or see this region's nucleotide sequence