Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3202
Experiment: Aluminum chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Aluminum chloride 5 mM |
---|---|---|---|---|---|
remove | |||||
3,844,687 | + | Shewana3_3201 | 0.34 | -0.4 | |
3,844,873 | - | Shewana3_3201 | 0.54 | +0.1 | |
3,844,944 | + | Shewana3_3201 | 0.61 | -1.8 | |
3,844,944 | + | Shewana3_3201 | 0.61 | -0.3 | |
3,844,952 | - | Shewana3_3201 | 0.62 | +0.5 | |
3,845,041 | + | Shewana3_3201 | 0.72 | -0.8 | |
3,845,056 | - | Shewana3_3201 | 0.73 | -0.7 | |
3,845,088 | - | Shewana3_3201 | 0.77 | +0.8 | |
3,845,706 | - | Shewana3_3202 | 0.54 | +0.5 | |
3,845,910 | - | Shewana3_3202 | 0.86 | -0.2 | |
3,845,952 | + | -0.8 | |||
3,845,959 | - | +0.2 | |||
3,846,088 | + | +0.0 | |||
3,846,088 | + | +1.0 | |||
3,846,088 | + | +0.5 | |||
3,846,096 | - | -0.4 | |||
3,846,137 | + | djlA | Shewana3_3203 | 0.10 | +2.6 |
3,846,328 | - | djlA | Shewana3_3203 | 0.34 | -0.8 |
3,846,355 | + | djlA | Shewana3_3203 | 0.38 | +1.0 |
3,846,356 | + | djlA | Shewana3_3203 | 0.38 | +1.0 |
3,846,369 | - | djlA | Shewana3_3203 | 0.39 | -0.1 |
3,846,477 | - | djlA | Shewana3_3203 | 0.53 | -0.1 |
3,846,510 | + | djlA | Shewana3_3203 | 0.57 | +2.6 |
3,846,687 | - | djlA | Shewana3_3203 | 0.80 | +0.0 |
3,846,833 | + | +1.0 | |||
3,846,958 | - | -0.4 |
Or see this region's nucleotide sequence