Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3164

Experiment: Aluminum chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3163 and Shewana3_3164 are separated by 377 nucleotidesShewana3_3164 and Shewana3_3165 are separated by 8 nucleotides Shewana3_3163: Shewana3_3163 - sodium:dicarboxylate symporter (RefSeq), at 3,794,450 to 3,795,703 _3163 Shewana3_3164: Shewana3_3164 - sodium ion-translocating decarboxylase, beta subunit (RefSeq), at 3,796,081 to 3,797,211 _3164 Shewana3_3165: Shewana3_3165 - oxaloacetate decarboxylase (RefSeq), at 3,797,220 to 3,799,055 _3165 Position (kb) 3796 3797 3798Strain fitness (log2 ratio) -1 0 1 2at 3795.125 kb on - strand, within Shewana3_3163at 3795.167 kb on + strand, within Shewana3_3163at 3795.167 kb on + strand, within Shewana3_3163at 3795.177 kb on - strand, within Shewana3_3163at 3795.326 kb on + strand, within Shewana3_3163at 3795.581 kb on + strandat 3795.658 kb on + strandat 3795.666 kb on - strandat 3795.666 kb on - strandat 3795.823 kb on + strandat 3796.131 kb on - strandat 3796.131 kb on - strandat 3796.454 kb on + strand, within Shewana3_3164at 3796.516 kb on + strand, within Shewana3_3164at 3796.516 kb on + strand, within Shewana3_3164at 3796.609 kb on - strand, within Shewana3_3164at 3796.611 kb on + strand, within Shewana3_3164at 3796.744 kb on - strand, within Shewana3_3164at 3797.000 kb on + strand, within Shewana3_3164at 3797.008 kb on - strand, within Shewana3_3164at 3797.099 kb on - strandat 3797.121 kb on + strandat 3797.124 kb on - strandat 3797.151 kb on - strandat 3797.508 kb on + strand, within Shewana3_3165at 3797.597 kb on - strand, within Shewana3_3165at 3797.768 kb on - strand, within Shewana3_3165at 3798.068 kb on + strand, within Shewana3_3165at 3798.182 kb on - strand, within Shewana3_3165at 3798.182 kb on - strand, within Shewana3_3165

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
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3,795,125 - Shewana3_3163 0.54 +1.0
3,795,167 + Shewana3_3163 0.57 -0.3
3,795,167 + Shewana3_3163 0.57 +0.1
3,795,177 - Shewana3_3163 0.58 +1.0
3,795,326 + Shewana3_3163 0.70 +0.0
3,795,581 + +0.3
3,795,658 + +0.1
3,795,666 - -0.5
3,795,666 - +1.0
3,795,823 + +0.0
3,796,131 - -0.0
3,796,131 - +0.3
3,796,454 + Shewana3_3164 0.33 +0.0
3,796,516 + Shewana3_3164 0.38 +2.0
3,796,516 + Shewana3_3164 0.38 -0.5
3,796,609 - Shewana3_3164 0.47 -0.5
3,796,611 + Shewana3_3164 0.47 -1.5
3,796,744 - Shewana3_3164 0.59 -1.1
3,797,000 + Shewana3_3164 0.81 +0.0
3,797,008 - Shewana3_3164 0.82 -0.9
3,797,099 - -0.2
3,797,121 + +1.0
3,797,124 - -0.6
3,797,151 - +1.6
3,797,508 + Shewana3_3165 0.16 +0.0
3,797,597 - Shewana3_3165 0.21 -0.9
3,797,768 - Shewana3_3165 0.30 +2.6
3,798,068 + Shewana3_3165 0.46 +1.0
3,798,182 - Shewana3_3165 0.52 -0.3
3,798,182 - Shewana3_3165 0.52 +1.5

Or see this region's nucleotide sequence