Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3131

Experiment: Aluminum chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3129 and Shewana3_3130 are separated by 3 nucleotidesShewana3_3130 and Shewana3_3131 are separated by 15 nucleotidesShewana3_3131 and Shewana3_3132 are separated by 0 nucleotidesShewana3_3132 and ispH are separated by 215 nucleotides Shewana3_3129: Shewana3_3129 - type IV pilin biogenesis protein, putative (RefSeq), at 3,753,033 to 3,756,539 _3129 Shewana3_3130: Shewana3_3130 - type IV pilus assembly protein PilX (RefSeq), at 3,756,543 to 3,757,004 _3130 Shewana3_3131: Shewana3_3131 - prepilin-type cleavage/methylation-like protein (RefSeq), at 3,757,020 to 3,758,012 _3131 Shewana3_3132: Shewana3_3132 - type IV pilus modification protein PilV (RefSeq), at 3,758,013 to 3,758,573 _3132 Shewana3_3133: ispH - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (RefSeq), at 3,758,789 to 3,759,745 ispH Position (kb) 3757 3758 3759Strain fitness (log2 ratio) -2 -1 0 1 2at 3756.073 kb on - strand, within Shewana3_3129at 3756.073 kb on - strand, within Shewana3_3129at 3756.083 kb on - strand, within Shewana3_3129at 3756.085 kb on + strand, within Shewana3_3129at 3756.093 kb on - strand, within Shewana3_3129at 3756.146 kb on - strand, within Shewana3_3129at 3756.156 kb on + strand, within Shewana3_3129at 3756.164 kb on - strand, within Shewana3_3129at 3756.171 kb on - strand, within Shewana3_3129at 3756.264 kb on - strandat 3756.273 kb on + strandat 3756.283 kb on - strandat 3756.326 kb on - strandat 3756.395 kb on - strandat 3756.461 kb on - strandat 3757.141 kb on + strand, within Shewana3_3131at 3757.275 kb on - strand, within Shewana3_3131at 3757.346 kb on + strand, within Shewana3_3131at 3757.354 kb on - strand, within Shewana3_3131at 3758.065 kb on + strandat 3758.182 kb on - strand, within Shewana3_3132at 3758.406 kb on + strand, within Shewana3_3132

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
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3,756,073 - Shewana3_3129 0.87 -1.0
3,756,073 - Shewana3_3129 0.87 -0.6
3,756,083 - Shewana3_3129 0.87 -0.3
3,756,085 + Shewana3_3129 0.87 +1.0
3,756,093 - Shewana3_3129 0.87 +0.2
3,756,146 - Shewana3_3129 0.89 +1.0
3,756,156 + Shewana3_3129 0.89 +0.0
3,756,164 - Shewana3_3129 0.89 -0.8
3,756,171 - Shewana3_3129 0.89 +1.0
3,756,264 - -1.1
3,756,273 + +1.0
3,756,283 - +2.6
3,756,326 - +0.0
3,756,395 - +0.0
3,756,461 - +1.2
3,757,141 + Shewana3_3131 0.12 +1.0
3,757,275 - Shewana3_3131 0.26 -2.4
3,757,346 + Shewana3_3131 0.33 +1.0
3,757,354 - Shewana3_3131 0.34 -0.8
3,758,065 + +0.0
3,758,182 - Shewana3_3132 0.30 +0.3
3,758,406 + Shewana3_3132 0.70 -0.1

Or see this region's nucleotide sequence