Experiment: Aluminum chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2655 and Shewana3_2656 are separated by 118 nucleotides Shewana3_2656 and Shewana3_2657 are separated by 149 nucleotides Shewana3_2657 and Shewana3_2658 are separated by 226 nucleotides Shewana3_2658 and Shewana3_2659 are separated by 260 nucleotides
Shewana3_2655: Shewana3_2655 - trans-2-enoyl-CoA reductase (RefSeq), at 3,168,667 to 3,169,869
_2655
Shewana3_2656: Shewana3_2656 - molybdenum-pterin binding (RefSeq), at 3,169,988 to 3,170,200
_2656
Shewana3_2657: Shewana3_2657 - PpiC-type peptidyl-prolyl cis-trans isomerase (RefSeq), at 3,170,350 to 3,172,215
_2657
Shewana3_2658: Shewana3_2658 - histone family protein DNA-binding protein (RefSeq), at 3,172,442 to 3,172,714
_2658
Shewana3_2659: Shewana3_2659 - Lon-A peptidase (RefSeq), at 3,172,975 to 3,175,332
_2659
Position (kb)
3170
3171
3172
3173 Strain fitness (log2 ratio)
-1
0
1 at 3170.087 kb on + strand, within Shewana3_2656 at 3170.095 kb on - strand, within Shewana3_2656 at 3170.095 kb on - strand, within Shewana3_2656 at 3170.850 kb on - strand, within Shewana3_2657 at 3170.896 kb on - strand, within Shewana3_2657 at 3170.950 kb on - strand, within Shewana3_2657 at 3171.187 kb on - strand, within Shewana3_2657 at 3171.426 kb on - strand, within Shewana3_2657 at 3171.615 kb on - strand, within Shewana3_2657 at 3172.025 kb on - strand, within Shewana3_2657 at 3172.897 kb on + strand at 3172.905 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM remove 3,170,087 + Shewana3_2656 0.46 -0.0 3,170,095 - Shewana3_2656 0.50 +0.9 3,170,095 - Shewana3_2656 0.50 +0.9 3,170,850 - Shewana3_2657 0.27 -0.2 3,170,896 - Shewana3_2657 0.29 -0.5 3,170,950 - Shewana3_2657 0.32 +0.3 3,171,187 - Shewana3_2657 0.45 -0.7 3,171,426 - Shewana3_2657 0.58 +0.5 3,171,615 - Shewana3_2657 0.68 +0.4 3,172,025 - Shewana3_2657 0.90 -0.7 3,172,897 + -1.1 3,172,905 - -0.3
Or see this region's nucleotide sequence