Experiment: Aluminum chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2640 and Shewana3_2641 are separated by 19 nucleotides Shewana3_2641 and ffs are separated by 51 nucleotides ffs and Shewana3_2642 are separated by 217 nucleotides Shewana3_2642 and Shewana3_2643 are separated by 205 nucleotides
Shewana3_2640: Shewana3_2640 - hypothetical protein (RefSeq), at 3,151,732 to 3,154,080
_2640
Shewana3_2641: Shewana3_2641 - phage integrase family protein (RefSeq), at 3,154,100 to 3,155,380
_2641
Shewana3_R0111: ffs - SRP RNA; RNA component of signal recognition particle (NCBI), at 3,155,432 to 3,155,547
ffs
Shewana3_2642: Shewana3_2642 - helix-hairpin-helix repeat-containing competence protein ComEA (RefSeq), at 3,155,765 to 3,156,130
_2642
Shewana3_2643: Shewana3_2643 - methionine gamma-lyase (RefSeq), at 3,156,336 to 3,157,529
_2643
Position (kb)
3154
3155
3156 Strain fitness (log2 ratio)
-1
0
1
2 at 3153.112 kb on - strand, within Shewana3_2640 at 3153.138 kb on - strand, within Shewana3_2640 at 3153.264 kb on - strand, within Shewana3_2640 at 3153.292 kb on - strand, within Shewana3_2640 at 3153.320 kb on - strand, within Shewana3_2640 at 3153.379 kb on - strand, within Shewana3_2640 at 3153.425 kb on - strand, within Shewana3_2640 at 3153.435 kb on - strand, within Shewana3_2640 at 3153.562 kb on - strand, within Shewana3_2640 at 3153.576 kb on - strand, within Shewana3_2640 at 3153.582 kb on + strand at 3153.587 kb on + strand, within Shewana3_2640 at 3153.588 kb on + strand, within Shewana3_2640 at 3153.588 kb on + strand, within Shewana3_2640 at 3153.596 kb on - strand, within Shewana3_2640 at 3153.601 kb on - strand, within Shewana3_2640 at 3153.615 kb on + strand, within Shewana3_2640 at 3153.623 kb on + strand, within Shewana3_2640 at 3153.623 kb on + strand, within Shewana3_2640 at 3153.623 kb on + strand, within Shewana3_2640 at 3153.623 kb on + strand at 3153.623 kb on + strand, within Shewana3_2640 at 3153.623 kb on + strand, within Shewana3_2640 at 3153.623 kb on + strand, within Shewana3_2640 at 3153.623 kb on + strand, within Shewana3_2640 at 3153.623 kb on + strand, within Shewana3_2640 at 3153.623 kb on + strand, within Shewana3_2640 at 3153.623 kb on + strand, within Shewana3_2640 at 3153.631 kb on - strand, within Shewana3_2640 at 3153.631 kb on - strand, within Shewana3_2640 at 3153.631 kb on - strand, within Shewana3_2640 at 3153.631 kb on - strand, within Shewana3_2640 at 3153.665 kb on + strand, within Shewana3_2640 at 3153.674 kb on - strand, within Shewana3_2640 at 3153.712 kb on + strand, within Shewana3_2640 at 3153.720 kb on - strand, within Shewana3_2640 at 3153.720 kb on - strand, within Shewana3_2640 at 3153.722 kb on - strand, within Shewana3_2640 at 3153.735 kb on + strand, within Shewana3_2640 at 3153.791 kb on - strand, within Shewana3_2640 at 3153.791 kb on - strand, within Shewana3_2640 at 3153.810 kb on + strand, within Shewana3_2640 at 3153.810 kb on + strand, within Shewana3_2640 at 3153.826 kb on - strand, within Shewana3_2640 at 3153.859 kb on + strand at 3153.859 kb on - strand at 3153.864 kb on - strand at 3153.882 kb on + strand at 3153.890 kb on - strand at 3153.939 kb on + strand at 3153.951 kb on + strand at 3153.959 kb on - strand at 3153.959 kb on - strand at 3153.959 kb on - strand at 3153.959 kb on - strand at 3153.959 kb on - strand at 3153.959 kb on - strand at 3153.959 kb on - strand at 3153.959 kb on - strand at 3154.005 kb on - strand at 3154.005 kb on - strand at 3154.050 kb on - strand at 3154.166 kb on - strand at 3154.180 kb on - strand at 3154.242 kb on - strand, within Shewana3_2641 at 3154.242 kb on - strand, within Shewana3_2641 at 3154.264 kb on + strand, within Shewana3_2641 at 3154.272 kb on - strand, within Shewana3_2641 at 3154.334 kb on + strand, within Shewana3_2641 at 3154.372 kb on + strand, within Shewana3_2641 at 3154.447 kb on - strand, within Shewana3_2641 at 3154.517 kb on - strand, within Shewana3_2641 at 3154.698 kb on + strand, within Shewana3_2641 at 3154.706 kb on - strand, within Shewana3_2641 at 3154.739 kb on + strand, within Shewana3_2641 at 3155.008 kb on + strand, within Shewana3_2641 at 3155.316 kb on - strand at 3155.808 kb on - strand, within Shewana3_2642 at 3155.893 kb on - strand, within Shewana3_2642 at 3155.922 kb on - strand, within Shewana3_2642
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM remove 3,153,112 - Shewana3_2640 0.59 +0.9 3,153,138 - Shewana3_2640 0.60 -0.3 3,153,264 - Shewana3_2640 0.65 +0.6 3,153,292 - Shewana3_2640 0.66 +1.9 3,153,320 - Shewana3_2640 0.68 +0.9 3,153,379 - Shewana3_2640 0.70 +0.3 3,153,425 - Shewana3_2640 0.72 +0.5 3,153,435 - Shewana3_2640 0.72 +0.9 3,153,562 - Shewana3_2640 0.78 +0.9 3,153,576 - Shewana3_2640 0.79 +0.9 3,153,582 + +0.9 3,153,587 + Shewana3_2640 0.79 +0.9 3,153,588 + Shewana3_2640 0.79 +0.9 3,153,588 + Shewana3_2640 0.79 +0.9 3,153,596 - Shewana3_2640 0.79 +0.9 3,153,601 - Shewana3_2640 0.80 +0.9 3,153,615 + Shewana3_2640 0.80 -0.1 3,153,623 + Shewana3_2640 0.81 +0.9 3,153,623 + Shewana3_2640 0.81 +0.9 3,153,623 + Shewana3_2640 0.81 -0.1 3,153,623 + +0.9 3,153,623 + Shewana3_2640 0.81 +0.9 3,153,623 + Shewana3_2640 0.81 -0.3 3,153,623 + Shewana3_2640 0.81 +0.9 3,153,623 + Shewana3_2640 0.81 +0.9 3,153,623 + Shewana3_2640 0.81 +0.9 3,153,623 + Shewana3_2640 0.81 +1.9 3,153,623 + Shewana3_2640 0.81 +0.9 3,153,631 - Shewana3_2640 0.81 +0.9 3,153,631 - Shewana3_2640 0.81 -0.1 3,153,631 - Shewana3_2640 0.81 +0.9 3,153,631 - Shewana3_2640 0.81 +0.9 3,153,665 + Shewana3_2640 0.82 -1.1 3,153,674 - Shewana3_2640 0.83 +0.3 3,153,712 + Shewana3_2640 0.84 +0.9 3,153,720 - Shewana3_2640 0.85 -0.5 3,153,720 - Shewana3_2640 0.85 +0.9 3,153,722 - Shewana3_2640 0.85 +2.2 3,153,735 + Shewana3_2640 0.85 -0.1 3,153,791 - Shewana3_2640 0.88 +0.9 3,153,791 - Shewana3_2640 0.88 -0.1 3,153,810 + Shewana3_2640 0.88 +0.9 3,153,810 + Shewana3_2640 0.88 +0.9 3,153,826 - Shewana3_2640 0.89 -0.1 3,153,859 + +0.9 3,153,859 - +0.9 3,153,864 - -1.1 3,153,882 + -0.1 3,153,890 - +2.5 3,153,939 + -0.1 3,153,951 + -0.1 3,153,959 - +0.9 3,153,959 - +0.9 3,153,959 - +0.9 3,153,959 - +0.9 3,153,959 - +0.9 3,153,959 - +0.3 3,153,959 - -0.1 3,153,959 - -0.1 3,154,005 - +1.5 3,154,005 - -1.4 3,154,050 - +0.9 3,154,166 - +0.9 3,154,180 - +0.9 3,154,242 - Shewana3_2641 0.11 -0.1 3,154,242 - Shewana3_2641 0.11 +0.9 3,154,264 + Shewana3_2641 0.13 -0.1 3,154,272 - Shewana3_2641 0.13 -0.7 3,154,334 + Shewana3_2641 0.18 -0.7 3,154,372 + Shewana3_2641 0.21 -0.1 3,154,447 - Shewana3_2641 0.27 -1.0 3,154,517 - Shewana3_2641 0.33 +0.3 3,154,698 + Shewana3_2641 0.47 +0.1 3,154,706 - Shewana3_2641 0.47 -1.1 3,154,739 + Shewana3_2641 0.50 -0.9 3,155,008 + Shewana3_2641 0.71 -0.1 3,155,316 - +0.9 3,155,808 - Shewana3_2642 0.12 -0.3 3,155,893 - Shewana3_2642 0.35 +0.2 3,155,922 - Shewana3_2642 0.43 -0.0
Or see this region's nucleotide sequence