Experiment: Aluminum chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2567 and Shewana3_2568 are separated by 145 nucleotides Shewana3_2568 and Shewana3_2569 are separated by 433 nucleotides Shewana3_2569 and rrmA are separated by 306 nucleotides
Shewana3_2567: Shewana3_2567 - RNAse E (RefSeq), at 3,068,272 to 3,071,568
_2567
Shewana3_2568: Shewana3_2568 - sulphate transporter (RefSeq), at 3,071,714 to 3,073,273
_2568
Shewana3_2569: Shewana3_2569 - cold-shock DNA-binding protein family protein (RefSeq), at 3,073,707 to 3,073,916
_2569
Shewana3_2570: rrmA - 23S rRNA methyltransferase A (RefSeq), at 3,074,223 to 3,075,038
rrmA
Position (kb)
3071
3072
3073
3074 Strain fitness (log2 ratio)
-1
0
1 at 3070.827 kb on + strand, within Shewana3_2567 at 3070.837 kb on + strand, within Shewana3_2567 at 3071.082 kb on + strand, within Shewana3_2567 at 3071.241 kb on + strand at 3071.435 kb on + strand at 3072.479 kb on + strand, within Shewana3_2568 at 3072.740 kb on + strand, within Shewana3_2568 at 3072.936 kb on + strand, within Shewana3_2568 at 3073.081 kb on - strand, within Shewana3_2568 at 3073.473 kb on + strand at 3073.497 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM remove 3,070,827 + Shewana3_2567 0.77 -0.4 3,070,837 + Shewana3_2567 0.78 -0.8 3,071,082 + Shewana3_2567 0.85 -0.1 3,071,241 + -0.5 3,071,435 + +0.1 3,072,479 + Shewana3_2568 0.49 -1.1 3,072,740 + Shewana3_2568 0.66 -0.7 3,072,936 + Shewana3_2568 0.78 +0.9 3,073,081 - Shewana3_2568 0.88 -0.1 3,073,473 + +0.9 3,073,497 - +0.9
Or see this region's nucleotide sequence