Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2493

Experiment: Aluminum chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2492 and Shewana3_2493 are separated by 97 nucleotidesShewana3_2493 and Shewana3_2494 are separated by 34 nucleotidesShewana3_2494 and Shewana3_2495 are separated by 128 nucleotides Shewana3_2492: Shewana3_2492 - peptidyl-dipeptidase Dcp (RefSeq), at 2,982,552 to 2,984,780 _2492 Shewana3_2493: Shewana3_2493 - GCN5-related N-acetyltransferase (RefSeq), at 2,984,878 to 2,985,375 _2493 Shewana3_2494: Shewana3_2494 - nitroreductase (RefSeq), at 2,985,410 to 2,985,958 _2494 Shewana3_2495: Shewana3_2495 - DoxX family protein (RefSeq), at 2,986,087 to 2,986,680 _2495 Position (kb) 2984 2985 2986Strain fitness (log2 ratio) -2 -1 0 1 2at 2983.901 kb on + strand, within Shewana3_2492at 2984.083 kb on + strand, within Shewana3_2492at 2984.127 kb on - strand, within Shewana3_2492at 2984.758 kb on + strandat 2984.909 kb on + strandat 2985.018 kb on - strand, within Shewana3_2493at 2985.045 kb on - strand, within Shewana3_2493at 2985.047 kb on + strand, within Shewana3_2493at 2985.068 kb on + strand, within Shewana3_2493at 2985.177 kb on - strand, within Shewana3_2493at 2985.235 kb on - strand, within Shewana3_2493at 2985.351 kb on + strandat 2985.409 kb on + strandat 2985.466 kb on + strand, within Shewana3_2494at 2985.672 kb on - strand, within Shewana3_2494at 2985.694 kb on + strand, within Shewana3_2494at 2985.781 kb on + strand, within Shewana3_2494at 2985.797 kb on + strand, within Shewana3_2494at 2985.799 kb on - strand, within Shewana3_2494at 2985.799 kb on - strand, within Shewana3_2494at 2985.799 kb on - strand, within Shewana3_2494at 2985.805 kb on - strand, within Shewana3_2494at 2985.805 kb on - strand, within Shewana3_2494at 2986.105 kb on - strandat 2986.150 kb on + strand, within Shewana3_2495at 2986.220 kb on - strand, within Shewana3_2495at 2986.239 kb on - strand, within Shewana3_2495

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
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2,983,901 + Shewana3_2492 0.61 -0.1
2,984,083 + Shewana3_2492 0.69 +1.6
2,984,127 - Shewana3_2492 0.71 -1.9
2,984,758 + -0.3
2,984,909 + +0.9
2,985,018 - Shewana3_2493 0.28 +0.2
2,985,045 - Shewana3_2493 0.34 +0.1
2,985,047 + Shewana3_2493 0.34 -0.7
2,985,068 + Shewana3_2493 0.38 +0.5
2,985,177 - Shewana3_2493 0.60 +0.6
2,985,235 - Shewana3_2493 0.72 +0.2
2,985,351 + +0.9
2,985,409 + +0.9
2,985,466 + Shewana3_2494 0.10 +0.5
2,985,672 - Shewana3_2494 0.48 -0.0
2,985,694 + Shewana3_2494 0.52 +0.3
2,985,781 + Shewana3_2494 0.68 +0.9
2,985,797 + Shewana3_2494 0.70 +1.9
2,985,799 - Shewana3_2494 0.71 +0.7
2,985,799 - Shewana3_2494 0.71 +0.6
2,985,799 - Shewana3_2494 0.71 +0.0
2,985,805 - Shewana3_2494 0.72 +0.2
2,985,805 - Shewana3_2494 0.72 +0.8
2,986,105 - +0.3
2,986,150 + Shewana3_2495 0.11 +2.5
2,986,220 - Shewana3_2495 0.22 -1.1
2,986,239 - Shewana3_2495 0.26 +0.3

Or see this region's nucleotide sequence