Experiment: Aluminum chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2354 and Shewana3_2355 are separated by 12 nucleotides Shewana3_2355 and Shewana3_2356 overlap by 4 nucleotides Shewana3_2356 and Shewana3_2357 are separated by 9 nucleotides Shewana3_2357 and Shewana3_2358 are separated by 155 nucleotides Shewana3_2358 and Shewana3_2359 are separated by 78 nucleotides
Shewana3_2354: Shewana3_2354 - phage integrase family protein (RefSeq), at 2,831,908 to 2,835,000
_2354
Shewana3_2355: Shewana3_2355 - metal dependent phosphohydrolase (RefSeq), at 2,835,013 to 2,835,888
_2355
Shewana3_2356: Shewana3_2356 - phage integrase family protein (RefSeq), at 2,835,885 to 2,837,063
_2356
Shewana3_2357: Shewana3_2357 - hypothetical protein (RefSeq), at 2,837,073 to 2,837,285
_2357
Shewana3_2358: Shewana3_2358 - hypothetical protein (RefSeq), at 2,837,441 to 2,837,677
_2358
Shewana3_2359: Shewana3_2359 - transposase IS3/IS911 family protein (RefSeq), at 2,837,756 to 2,838,001
_2359
Position (kb)
2835
2836
2837
2838 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2835.167 kb on - strand, within Shewana3_2355 at 2835.240 kb on - strand, within Shewana3_2355 at 2835.713 kb on - strand, within Shewana3_2355 at 2835.786 kb on + strand, within Shewana3_2355 at 2835.786 kb on + strand, within Shewana3_2355 at 2835.789 kb on - strand, within Shewana3_2355 at 2835.794 kb on - strand, within Shewana3_2355 at 2835.950 kb on - strand at 2836.040 kb on + strand, within Shewana3_2356 at 2836.126 kb on - strand, within Shewana3_2356 at 2836.270 kb on + strand, within Shewana3_2356 at 2836.297 kb on - strand, within Shewana3_2356 at 2836.297 kb on - strand, within Shewana3_2356 at 2836.367 kb on - strand, within Shewana3_2356 at 2836.391 kb on - strand, within Shewana3_2356 at 2836.416 kb on - strand, within Shewana3_2356 at 2836.438 kb on - strand, within Shewana3_2356 at 2836.689 kb on - strand, within Shewana3_2356 at 2836.986 kb on + strand at 2837.069 kb on - strand at 2837.134 kb on - strand, within Shewana3_2357 at 2837.207 kb on + strand, within Shewana3_2357 at 2837.259 kb on + strand, within Shewana3_2357 at 2837.754 kb on - strand at 2837.874 kb on + strand, within Shewana3_2359 at 2837.936 kb on - strand, within Shewana3_2359
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM remove 2,835,167 - Shewana3_2355 0.18 -0.1 2,835,240 - Shewana3_2355 0.26 +0.9 2,835,713 - Shewana3_2355 0.80 -1.1 2,835,786 + Shewana3_2355 0.88 +0.9 2,835,786 + Shewana3_2355 0.88 +0.9 2,835,789 - Shewana3_2355 0.89 +2.9 2,835,794 - Shewana3_2355 0.89 +0.1 2,835,950 - +0.9 2,836,040 + Shewana3_2356 0.13 -0.1 2,836,126 - Shewana3_2356 0.20 -0.1 2,836,270 + Shewana3_2356 0.33 +0.9 2,836,297 - Shewana3_2356 0.35 +0.5 2,836,297 - Shewana3_2356 0.35 +2.5 2,836,367 - Shewana3_2356 0.41 -0.1 2,836,391 - Shewana3_2356 0.43 +0.9 2,836,416 - Shewana3_2356 0.45 +0.9 2,836,438 - Shewana3_2356 0.47 +1.9 2,836,689 - Shewana3_2356 0.68 +1.5 2,836,986 + -0.1 2,837,069 - +0.6 2,837,134 - Shewana3_2357 0.29 -1.4 2,837,207 + Shewana3_2357 0.63 +0.9 2,837,259 + Shewana3_2357 0.87 -0.1 2,837,754 - +0.3 2,837,874 + Shewana3_2359 0.48 +1.5 2,837,936 - Shewana3_2359 0.73 +1.5
Or see this region's nucleotide sequence