Experiment: Aluminum chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2196 and Shewana3_2197 are separated by 202 nucleotides Shewana3_2197 and Shewana3_2198 are separated by 340 nucleotides
Shewana3_2196: Shewana3_2196 - PepSY-associated TM helix domain-containing protein (RefSeq), at 2,635,685 to 2,636,854
_2196
Shewana3_2197: Shewana3_2197 - beta-lactamase domain-containing protein (RefSeq), at 2,637,057 to 2,637,953
_2197
Shewana3_2198: Shewana3_2198 - hypothetical protein (RefSeq), at 2,638,294 to 2,639,196
_2198
Position (kb)
2637
2638 Strain fitness (log2 ratio)
-1
0
1
2 at 2636.227 kb on + strand, within Shewana3_2196 at 2636.311 kb on - strand, within Shewana3_2196 at 2636.328 kb on - strand, within Shewana3_2196 at 2636.563 kb on + strand, within Shewana3_2196 at 2636.632 kb on + strand, within Shewana3_2196 at 2636.808 kb on + strand at 2636.891 kb on + strand at 2637.132 kb on - strand at 2637.199 kb on - strand, within Shewana3_2197 at 2637.208 kb on + strand, within Shewana3_2197 at 2637.216 kb on - strand, within Shewana3_2197 at 2637.345 kb on - strand, within Shewana3_2197 at 2637.460 kb on - strand, within Shewana3_2197 at 2637.496 kb on + strand, within Shewana3_2197 at 2638.065 kb on - strand at 2638.268 kb on - strand at 2638.284 kb on - strand at 2638.361 kb on - strand at 2638.633 kb on + strand, within Shewana3_2198 at 2638.641 kb on - strand, within Shewana3_2198 at 2638.706 kb on + strand, within Shewana3_2198 at 2638.783 kb on + strand, within Shewana3_2198
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM remove 2,636,227 + Shewana3_2196 0.46 +1.0 2,636,311 - Shewana3_2196 0.54 -1.0 2,636,328 - Shewana3_2196 0.55 +1.0 2,636,563 + Shewana3_2196 0.75 +1.0 2,636,632 + Shewana3_2196 0.81 +2.0 2,636,808 + +1.0 2,636,891 + +1.0 2,637,132 - +1.0 2,637,199 - Shewana3_2197 0.16 -0.0 2,637,208 + Shewana3_2197 0.17 -0.0 2,637,216 - Shewana3_2197 0.18 +1.0 2,637,345 - Shewana3_2197 0.32 -0.6 2,637,460 - Shewana3_2197 0.45 +1.0 2,637,496 + Shewana3_2197 0.49 +1.0 2,638,065 - +1.0 2,638,268 - +1.0 2,638,284 - +1.0 2,638,361 - +1.0 2,638,633 + Shewana3_2198 0.38 +1.0 2,638,641 - Shewana3_2198 0.38 +1.0 2,638,706 + Shewana3_2198 0.46 +1.0 2,638,783 + Shewana3_2198 0.54 +1.0
Or see this region's nucleotide sequence