Experiment: Aluminum chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1916 and Shewana3_1917 overlap by 4 nucleotides Shewana3_1917 and Shewana3_1918 are separated by 2 nucleotides
Shewana3_1916: Shewana3_1916 - putative efflux protein (RefSeq), at 2,275,127 to 2,276,239
_1916
Shewana3_1917: Shewana3_1917 - acriflavin resistance protein (RefSeq), at 2,276,236 to 2,279,343
_1917
Shewana3_1918: Shewana3_1918 - outer membrane efflux protein (RefSeq), at 2,279,346 to 2,280,815
_1918
Position (kb)
2276
2277
2278
2279
2280 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2275.275 kb on - strand, within Shewana3_1916 at 2275.354 kb on - strand, within Shewana3_1916 at 2275.556 kb on + strand, within Shewana3_1916 at 2275.645 kb on + strand, within Shewana3_1916 at 2275.645 kb on + strand, within Shewana3_1916 at 2275.653 kb on - strand, within Shewana3_1916 at 2275.655 kb on + strand, within Shewana3_1916 at 2275.658 kb on - strand, within Shewana3_1916 at 2275.905 kb on + strand, within Shewana3_1916 at 2275.905 kb on + strand, within Shewana3_1916 at 2275.984 kb on + strand, within Shewana3_1916 at 2276.389 kb on - strand at 2276.508 kb on - strand at 2276.546 kb on + strand at 2276.578 kb on - strand, within Shewana3_1917 at 2276.601 kb on + strand, within Shewana3_1917 at 2276.668 kb on + strand, within Shewana3_1917 at 2276.945 kb on + strand, within Shewana3_1917 at 2276.980 kb on + strand, within Shewana3_1917 at 2277.146 kb on + strand, within Shewana3_1917 at 2277.517 kb on + strand, within Shewana3_1917 at 2277.643 kb on + strand, within Shewana3_1917 at 2277.933 kb on + strand, within Shewana3_1917 at 2277.941 kb on - strand, within Shewana3_1917 at 2277.972 kb on + strand, within Shewana3_1917 at 2278.144 kb on - strand, within Shewana3_1917 at 2278.267 kb on + strand, within Shewana3_1917 at 2278.270 kb on + strand, within Shewana3_1917 at 2278.270 kb on + strand, within Shewana3_1917 at 2278.275 kb on - strand, within Shewana3_1917 at 2278.360 kb on + strand, within Shewana3_1917 at 2278.452 kb on - strand, within Shewana3_1917 at 2278.699 kb on + strand, within Shewana3_1917 at 2278.770 kb on + strand, within Shewana3_1917 at 2278.825 kb on + strand, within Shewana3_1917 at 2279.266 kb on - strand at 2279.287 kb on - strand at 2279.376 kb on + strand at 2279.455 kb on - strand at 2279.483 kb on + strand at 2279.484 kb on + strand at 2279.540 kb on + strand, within Shewana3_1918 at 2279.727 kb on - strand, within Shewana3_1918 at 2279.782 kb on + strand, within Shewana3_1918 at 2279.788 kb on + strand, within Shewana3_1918 at 2279.866 kb on - strand, within Shewana3_1918 at 2279.900 kb on - strand, within Shewana3_1918 at 2280.000 kb on + strand, within Shewana3_1918 at 2280.027 kb on - strand, within Shewana3_1918 at 2280.041 kb on - strand, within Shewana3_1918 at 2280.242 kb on - strand, within Shewana3_1918 at 2280.264 kb on - strand, within Shewana3_1918
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM remove 2,275,275 - Shewana3_1916 0.13 -0.6 2,275,354 - Shewana3_1916 0.20 +0.1 2,275,556 + Shewana3_1916 0.39 +1.0 2,275,645 + Shewana3_1916 0.47 +1.0 2,275,645 + Shewana3_1916 0.47 +1.0 2,275,653 - Shewana3_1916 0.47 +1.0 2,275,655 + Shewana3_1916 0.47 -0.0 2,275,658 - Shewana3_1916 0.48 -2.0 2,275,905 + Shewana3_1916 0.70 -0.6 2,275,905 + Shewana3_1916 0.70 +1.0 2,275,984 + Shewana3_1916 0.77 +1.0 2,276,389 - +1.0 2,276,508 - +1.0 2,276,546 + +0.1 2,276,578 - Shewana3_1917 0.11 +1.0 2,276,601 + Shewana3_1917 0.12 +1.8 2,276,668 + Shewana3_1917 0.14 -0.3 2,276,945 + Shewana3_1917 0.23 +0.7 2,276,980 + Shewana3_1917 0.24 -0.3 2,277,146 + Shewana3_1917 0.29 +1.0 2,277,517 + Shewana3_1917 0.41 -1.6 2,277,643 + Shewana3_1917 0.45 -0.6 2,277,933 + Shewana3_1917 0.55 +0.4 2,277,941 - Shewana3_1917 0.55 -0.6 2,277,972 + Shewana3_1917 0.56 -1.0 2,278,144 - Shewana3_1917 0.61 +1.0 2,278,267 + Shewana3_1917 0.65 +1.4 2,278,270 + Shewana3_1917 0.65 +1.0 2,278,270 + Shewana3_1917 0.65 -0.3 2,278,275 - Shewana3_1917 0.66 +1.0 2,278,360 + Shewana3_1917 0.68 +2.0 2,278,452 - Shewana3_1917 0.71 +1.0 2,278,699 + Shewana3_1917 0.79 +0.4 2,278,770 + Shewana3_1917 0.82 -1.6 2,278,825 + Shewana3_1917 0.83 +0.7 2,279,266 - +1.0 2,279,287 - -0.0 2,279,376 + +0.8 2,279,455 - +1.0 2,279,483 + -0.3 2,279,484 + +0.8 2,279,540 + Shewana3_1918 0.13 -1.0 2,279,727 - Shewana3_1918 0.26 +1.0 2,279,782 + Shewana3_1918 0.30 -0.6 2,279,788 + Shewana3_1918 0.30 +1.6 2,279,866 - Shewana3_1918 0.35 +1.0 2,279,900 - Shewana3_1918 0.38 +1.0 2,280,000 + Shewana3_1918 0.44 +0.6 2,280,027 - Shewana3_1918 0.46 -0.6 2,280,041 - Shewana3_1918 0.47 +2.0 2,280,242 - Shewana3_1918 0.61 +1.0 2,280,264 - Shewana3_1918 0.62 -0.1
Or see this region's nucleotide sequence