Experiment: Aluminum chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1881 and Shewana3_1882 are separated by 3 nucleotides Shewana3_1882 and Shewana3_1883 are separated by 93 nucleotides Shewana3_1883 and Shewana3_1884 are separated by 97 nucleotides
Shewana3_1881: Shewana3_1881 - redoxin domain-containing protein (RefSeq), at 2,228,984 to 2,229,466
_1881
Shewana3_1882: Shewana3_1882 - putative lipoprotein (RefSeq), at 2,229,470 to 2,229,691
_1882
Shewana3_1883: Shewana3_1883 - hypothetical protein (RefSeq), at 2,229,785 to 2,231,131
_1883
Shewana3_1884: Shewana3_1884 - ApbE family lipoprotein (RefSeq), at 2,231,229 to 2,232,131
_1884
Position (kb)
2229
2230
2231
2232 Strain fitness (log2 ratio)
-1
0
1 at 2229.246 kb on + strand, within Shewana3_1881 at 2229.538 kb on - strand, within Shewana3_1882 at 2229.880 kb on - strand at 2229.880 kb on - strand at 2229.912 kb on + strand at 2229.992 kb on - strand, within Shewana3_1883 at 2230.147 kb on + strand, within Shewana3_1883 at 2230.172 kb on - strand, within Shewana3_1883 at 2230.250 kb on + strand, within Shewana3_1883 at 2230.323 kb on + strand, within Shewana3_1883 at 2230.333 kb on + strand, within Shewana3_1883 at 2230.341 kb on - strand, within Shewana3_1883 at 2230.341 kb on - strand, within Shewana3_1883 at 2230.361 kb on + strand, within Shewana3_1883 at 2230.406 kb on + strand, within Shewana3_1883 at 2230.730 kb on + strand, within Shewana3_1883 at 2230.730 kb on + strand, within Shewana3_1883 at 2230.840 kb on - strand, within Shewana3_1883 at 2230.933 kb on - strand, within Shewana3_1883 at 2230.964 kb on - strand, within Shewana3_1883 at 2231.073 kb on + strand at 2231.106 kb on - strand at 2231.113 kb on + strand at 2231.221 kb on - strand at 2231.508 kb on + strand, within Shewana3_1884 at 2231.620 kb on - strand, within Shewana3_1884 at 2231.679 kb on + strand, within Shewana3_1884 at 2231.877 kb on - strand, within Shewana3_1884 at 2232.065 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM remove 2,229,246 + Shewana3_1881 0.54 -0.3 2,229,538 - Shewana3_1882 0.31 +0.4 2,229,880 - +1.0 2,229,880 - +1.0 2,229,912 + +1.0 2,229,992 - Shewana3_1883 0.15 +1.0 2,230,147 + Shewana3_1883 0.27 +1.0 2,230,172 - Shewana3_1883 0.29 +1.0 2,230,250 + Shewana3_1883 0.35 +1.0 2,230,323 + Shewana3_1883 0.40 +1.1 2,230,333 + Shewana3_1883 0.41 +0.6 2,230,341 - Shewana3_1883 0.41 +1.0 2,230,341 - Shewana3_1883 0.41 +1.0 2,230,361 + Shewana3_1883 0.43 +1.0 2,230,406 + Shewana3_1883 0.46 +1.0 2,230,730 + Shewana3_1883 0.70 +0.1 2,230,730 + Shewana3_1883 0.70 +0.4 2,230,840 - Shewana3_1883 0.78 +1.0 2,230,933 - Shewana3_1883 0.85 +1.0 2,230,964 - Shewana3_1883 0.88 +1.0 2,231,073 + +0.8 2,231,106 - +1.0 2,231,113 + -0.0 2,231,221 - -1.5 2,231,508 + Shewana3_1884 0.31 -0.0 2,231,620 - Shewana3_1884 0.43 +1.0 2,231,679 + Shewana3_1884 0.50 -0.6 2,231,877 - Shewana3_1884 0.72 +1.0 2,232,065 + -0.5
Or see this region's nucleotide sequence