Experiment: Aluminum chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1875 and Shewana3_1876 are separated by 71 nucleotides Shewana3_1876 and Shewana3_1877 overlap by 20 nucleotides Shewana3_1877 and Shewana3_1878 are separated by 7 nucleotides
Shewana3_1875: Shewana3_1875 - (NiFe) hydrogenase maturation protein HypF (RefSeq), at 2,220,113 to 2,222,620
_1875
Shewana3_1876: Shewana3_1876 - hypothetical protein (RefSeq), at 2,222,692 to 2,224,542
_1876
Shewana3_1877: Shewana3_1877 - hydrogenase expression/formation protein (RefSeq), at 2,224,523 to 2,225,101
_1877
Shewana3_1878: Shewana3_1878 - Ni/Fe-hydrogenase, b-type cytochrome subunit (RefSeq), at 2,225,109 to 2,225,783
_1878
Position (kb)
2222
2223
2224
2225 Strain fitness (log2 ratio)
-1
0
1
2 at 2221.982 kb on - strand, within Shewana3_1875 at 2222.004 kb on - strand, within Shewana3_1875 at 2222.113 kb on + strand, within Shewana3_1875 at 2222.446 kb on - strand at 2222.499 kb on - strand at 2222.807 kb on - strand at 2222.985 kb on - strand, within Shewana3_1876 at 2223.096 kb on + strand, within Shewana3_1876 at 2223.204 kb on + strand, within Shewana3_1876 at 2223.288 kb on - strand, within Shewana3_1876 at 2223.320 kb on + strand, within Shewana3_1876 at 2223.538 kb on + strand, within Shewana3_1876 at 2223.546 kb on - strand, within Shewana3_1876 at 2223.659 kb on - strand, within Shewana3_1876 at 2223.688 kb on - strand, within Shewana3_1876 at 2223.811 kb on + strand, within Shewana3_1876 at 2223.819 kb on - strand, within Shewana3_1876 at 2223.824 kb on - strand, within Shewana3_1876 at 2223.901 kb on + strand, within Shewana3_1876 at 2223.901 kb on + strand, within Shewana3_1876 at 2223.970 kb on - strand, within Shewana3_1876 at 2224.374 kb on + strand at 2224.455 kb on - strand at 2224.701 kb on - strand, within Shewana3_1877 at 2224.705 kb on + strand, within Shewana3_1877 at 2224.713 kb on - strand, within Shewana3_1877 at 2224.713 kb on - strand, within Shewana3_1877 at 2224.713 kb on - strand, within Shewana3_1877 at 2224.737 kb on - strand, within Shewana3_1877 at 2224.743 kb on - strand, within Shewana3_1877 at 2224.826 kb on - strand, within Shewana3_1877 at 2225.009 kb on - strand, within Shewana3_1877 at 2225.183 kb on + strand, within Shewana3_1878 at 2225.191 kb on - strand, within Shewana3_1878 at 2225.267 kb on + strand, within Shewana3_1878 at 2225.288 kb on - strand, within Shewana3_1878 at 2225.490 kb on - strand, within Shewana3_1878
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM remove 2,221,982 - Shewana3_1875 0.75 +1.0 2,222,004 - Shewana3_1875 0.75 -0.0 2,222,113 + Shewana3_1875 0.80 +1.0 2,222,446 - +1.0 2,222,499 - +1.0 2,222,807 - +0.5 2,222,985 - Shewana3_1876 0.16 +1.2 2,223,096 + Shewana3_1876 0.22 +1.0 2,223,204 + Shewana3_1876 0.28 +2.0 2,223,288 - Shewana3_1876 0.32 +2.0 2,223,320 + Shewana3_1876 0.34 +2.0 2,223,538 + Shewana3_1876 0.46 +1.0 2,223,546 - Shewana3_1876 0.46 +1.0 2,223,659 - Shewana3_1876 0.52 +1.0 2,223,688 - Shewana3_1876 0.54 +1.0 2,223,811 + Shewana3_1876 0.60 +1.0 2,223,819 - Shewana3_1876 0.61 +1.0 2,223,824 - Shewana3_1876 0.61 +1.0 2,223,901 + Shewana3_1876 0.65 +1.0 2,223,901 + Shewana3_1876 0.65 +1.0 2,223,970 - Shewana3_1876 0.69 +1.0 2,224,374 + +2.0 2,224,455 - +1.0 2,224,701 - Shewana3_1877 0.31 -0.0 2,224,705 + Shewana3_1877 0.31 +1.6 2,224,713 - Shewana3_1877 0.33 +1.0 2,224,713 - Shewana3_1877 0.33 -0.6 2,224,713 - Shewana3_1877 0.33 +1.0 2,224,737 - Shewana3_1877 0.37 +1.0 2,224,743 - Shewana3_1877 0.38 +1.0 2,224,826 - Shewana3_1877 0.52 -0.6 2,225,009 - Shewana3_1877 0.84 -1.3 2,225,183 + Shewana3_1878 0.11 -0.8 2,225,191 - Shewana3_1878 0.12 -0.3 2,225,267 + Shewana3_1878 0.23 +0.4 2,225,288 - Shewana3_1878 0.27 +0.2 2,225,490 - Shewana3_1878 0.56 +1.0
Or see this region's nucleotide sequence