Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1701

Experiment: Aluminum chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1699 and Shewana3_1700 are separated by 155 nucleotidesShewana3_1700 and Shewana3_1701 are separated by 268 nucleotidesShewana3_1701 and Shewana3_1702 are separated by 159 nucleotides Shewana3_1699: Shewana3_1699 - MATE efflux family protein (RefSeq), at 1,997,135 to 1,998,697 _1699 Shewana3_1700: Shewana3_1700 - hypothetical protein (RefSeq), at 1,998,853 to 1,999,071 _1700 Shewana3_1701: Shewana3_1701 - hypothetical protein (RefSeq), at 1,999,340 to 1,999,672 _1701 Shewana3_1702: Shewana3_1702 - acriflavin resistance protein (RefSeq), at 1,999,832 to 2,002,888 _1702 Position (kb) 1999 2000Strain fitness (log2 ratio) -1 0 1 2at 1998.376 kb on - strand, within Shewana3_1699at 1998.383 kb on + strand, within Shewana3_1699at 1998.391 kb on - strand, within Shewana3_1699at 1998.406 kb on + strand, within Shewana3_1699at 1998.452 kb on + strand, within Shewana3_1699at 1998.516 kb on - strand, within Shewana3_1699at 1998.516 kb on - strand, within Shewana3_1699at 1998.817 kb on + strandat 1998.858 kb on - strandat 1998.865 kb on + strandat 1998.871 kb on - strandat 1998.981 kb on + strand, within Shewana3_1700at 1998.981 kb on + strand, within Shewana3_1700at 1999.037 kb on + strand, within Shewana3_1700at 1999.553 kb on - strand, within Shewana3_1701at 1999.606 kb on - strand, within Shewana3_1701at 1999.847 kb on - strandat 1999.880 kb on - strandat 1999.910 kb on + strandat 1999.916 kb on - strandat 1999.918 kb on - strandat 1999.962 kb on - strandat 2000.078 kb on + strandat 2000.167 kb on - strand, within Shewana3_1702at 2000.247 kb on + strand, within Shewana3_1702at 2000.497 kb on + strand, within Shewana3_1702

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
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1,998,376 - Shewana3_1699 0.79 +0.2
1,998,383 + Shewana3_1699 0.80 -0.8
1,998,391 - Shewana3_1699 0.80 +1.0
1,998,406 + Shewana3_1699 0.81 +0.0
1,998,452 + Shewana3_1699 0.84 -0.3
1,998,516 - Shewana3_1699 0.88 +1.0
1,998,516 - Shewana3_1699 0.88 +1.0
1,998,817 + +1.0
1,998,858 - -1.2
1,998,865 + +1.0
1,998,871 - +0.1
1,998,981 + Shewana3_1700 0.58 +0.5
1,998,981 + Shewana3_1700 0.58 +1.0
1,999,037 + Shewana3_1700 0.84 +1.0
1,999,553 - Shewana3_1701 0.64 +1.2
1,999,606 - Shewana3_1701 0.80 +2.5
1,999,847 - -0.0
1,999,880 - -0.2
1,999,910 + -0.0
1,999,916 - +0.1
1,999,918 - -0.1
1,999,962 - +0.1
2,000,078 + +1.0
2,000,167 - Shewana3_1702 0.11 +1.5
2,000,247 + Shewana3_1702 0.14 +1.0
2,000,497 + Shewana3_1702 0.22 +1.0

Or see this region's nucleotide sequence