Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1652

Experiment: Aluminum chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1651 and Shewana3_1652 are separated by 111 nucleotidesShewana3_1652 and Shewana3_1653 are separated by 112 nucleotidesShewana3_1653 and bcp are separated by 180 nucleotides Shewana3_1651: Shewana3_1651 - hypothetical protein (RefSeq), at 1,942,047 to 1,943,147 _1651 Shewana3_1652: Shewana3_1652 - chromosome replication initiation inhibitor protein (RefSeq), at 1,943,259 to 1,944,176 _1652 Shewana3_1653: Shewana3_1653 - lysine exporter protein LysE/YggA (RefSeq), at 1,944,289 to 1,944,903 _1653 Shewana3_1654: bcp - thioredoxin-dependent thiol peroxidase (RefSeq), at 1,945,084 to 1,945,551 bcp Position (kb) 1943 1944 1945Strain fitness (log2 ratio) -2 -1 0 1 2at 1942.293 kb on + strand, within Shewana3_1651at 1942.293 kb on + strand, within Shewana3_1651at 1942.423 kb on + strand, within Shewana3_1651at 1942.696 kb on + strand, within Shewana3_1651at 1942.743 kb on + strand, within Shewana3_1651at 1942.787 kb on - strand, within Shewana3_1651at 1943.072 kb on + strandat 1943.128 kb on - strandat 1943.141 kb on + strandat 1943.244 kb on + strandat 1943.244 kb on + strandat 1943.304 kb on + strandat 1943.447 kb on + strand, within Shewana3_1652at 1943.571 kb on - strand, within Shewana3_1652at 1943.785 kb on + strand, within Shewana3_1652at 1943.793 kb on - strand, within Shewana3_1652at 1944.062 kb on + strand, within Shewana3_1652at 1944.387 kb on + strand, within Shewana3_1653at 1944.395 kb on - strand, within Shewana3_1653at 1944.466 kb on - strand, within Shewana3_1653at 1944.480 kb on + strand, within Shewana3_1653at 1944.541 kb on - strand, within Shewana3_1653at 1944.638 kb on + strand, within Shewana3_1653at 1945.135 kb on - strand, within bcp

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
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1,942,293 + Shewana3_1651 0.22 -1.2
1,942,293 + Shewana3_1651 0.22 -0.5
1,942,423 + Shewana3_1651 0.34 +1.0
1,942,696 + Shewana3_1651 0.59 -0.3
1,942,743 + Shewana3_1651 0.63 +0.8
1,942,787 - Shewana3_1651 0.67 +2.4
1,943,072 + -0.1
1,943,128 - +1.0
1,943,141 + +1.0
1,943,244 + +1.0
1,943,244 + +1.0
1,943,304 + +1.0
1,943,447 + Shewana3_1652 0.20 +1.0
1,943,571 - Shewana3_1652 0.34 -0.0
1,943,785 + Shewana3_1652 0.57 +1.0
1,943,793 - Shewana3_1652 0.58 -0.7
1,944,062 + Shewana3_1652 0.87 -0.8
1,944,387 + Shewana3_1653 0.16 +1.6
1,944,395 - Shewana3_1653 0.17 +2.0
1,944,466 - Shewana3_1653 0.29 +1.0
1,944,480 + Shewana3_1653 0.31 -2.2
1,944,541 - Shewana3_1653 0.41 +1.0
1,944,638 + Shewana3_1653 0.57 +0.7
1,945,135 - bcp Shewana3_1654 0.11 +0.3

Or see this region's nucleotide sequence