Experiment: Aluminum chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1651 and Shewana3_1652 are separated by 111 nucleotides Shewana3_1652 and Shewana3_1653 are separated by 112 nucleotides Shewana3_1653 and bcp are separated by 180 nucleotides
Shewana3_1651: Shewana3_1651 - hypothetical protein (RefSeq), at 1,942,047 to 1,943,147
_1651
Shewana3_1652: Shewana3_1652 - chromosome replication initiation inhibitor protein (RefSeq), at 1,943,259 to 1,944,176
_1652
Shewana3_1653: Shewana3_1653 - lysine exporter protein LysE/YggA (RefSeq), at 1,944,289 to 1,944,903
_1653
Shewana3_1654: bcp - thioredoxin-dependent thiol peroxidase (RefSeq), at 1,945,084 to 1,945,551
bcp
Position (kb)
1943
1944
1945 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1942.293 kb on + strand, within Shewana3_1651 at 1942.293 kb on + strand, within Shewana3_1651 at 1942.423 kb on + strand, within Shewana3_1651 at 1942.696 kb on + strand, within Shewana3_1651 at 1942.743 kb on + strand, within Shewana3_1651 at 1942.787 kb on - strand, within Shewana3_1651 at 1943.072 kb on + strand at 1943.128 kb on - strand at 1943.141 kb on + strand at 1943.244 kb on + strand at 1943.244 kb on + strand at 1943.304 kb on + strand at 1943.447 kb on + strand, within Shewana3_1652 at 1943.571 kb on - strand, within Shewana3_1652 at 1943.785 kb on + strand, within Shewana3_1652 at 1943.793 kb on - strand, within Shewana3_1652 at 1944.062 kb on + strand, within Shewana3_1652 at 1944.387 kb on + strand, within Shewana3_1653 at 1944.395 kb on - strand, within Shewana3_1653 at 1944.466 kb on - strand, within Shewana3_1653 at 1944.480 kb on + strand, within Shewana3_1653 at 1944.541 kb on - strand, within Shewana3_1653 at 1944.638 kb on + strand, within Shewana3_1653 at 1945.135 kb on - strand, within bcp
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM remove 1,942,293 + Shewana3_1651 0.22 -1.2 1,942,293 + Shewana3_1651 0.22 -0.5 1,942,423 + Shewana3_1651 0.34 +1.0 1,942,696 + Shewana3_1651 0.59 -0.3 1,942,743 + Shewana3_1651 0.63 +0.8 1,942,787 - Shewana3_1651 0.67 +2.4 1,943,072 + -0.1 1,943,128 - +1.0 1,943,141 + +1.0 1,943,244 + +1.0 1,943,244 + +1.0 1,943,304 + +1.0 1,943,447 + Shewana3_1652 0.20 +1.0 1,943,571 - Shewana3_1652 0.34 -0.0 1,943,785 + Shewana3_1652 0.57 +1.0 1,943,793 - Shewana3_1652 0.58 -0.7 1,944,062 + Shewana3_1652 0.87 -0.8 1,944,387 + Shewana3_1653 0.16 +1.6 1,944,395 - Shewana3_1653 0.17 +2.0 1,944,466 - Shewana3_1653 0.29 +1.0 1,944,480 + Shewana3_1653 0.31 -2.2 1,944,541 - Shewana3_1653 0.41 +1.0 1,944,638 + Shewana3_1653 0.57 +0.7 1,945,135 - bcp Shewana3_1654 0.11 +0.3
Or see this region's nucleotide sequence