Experiment: Aluminum chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1503 and Shewana3_1504 overlap by 1 nucleotides Shewana3_1504 and Shewana3_1505 overlap by 1 nucleotides Shewana3_1505 and Shewana3_1506 are separated by 160 nucleotides
Shewana3_1503: Shewana3_1503 - exonuclease III (RefSeq), at 1,750,675 to 1,751,487
_1503
Shewana3_1504: Shewana3_1504 - YciI-like protein (RefSeq), at 1,751,487 to 1,751,786
_1504
Shewana3_1505: Shewana3_1505 - intracellular septation protein A (RefSeq), at 1,751,786 to 1,752,331
_1505
Shewana3_1506: Shewana3_1506 - ferric iron reductase (RefSeq), at 1,752,492 to 1,753,526
_1506
Position (kb)
1751
1752
1753 Strain fitness (log2 ratio)
-1
0
1
2 at 1750.919 kb on + strand, within Shewana3_1503 at 1750.919 kb on + strand, within Shewana3_1503 at 1750.919 kb on + strand, within Shewana3_1503 at 1750.919 kb on + strand, within Shewana3_1503 at 1750.927 kb on - strand, within Shewana3_1503 at 1751.052 kb on - strand, within Shewana3_1503 at 1751.182 kb on - strand, within Shewana3_1503 at 1751.262 kb on - strand, within Shewana3_1503 at 1751.276 kb on + strand, within Shewana3_1503 at 1751.284 kb on + strand, within Shewana3_1503 at 1751.568 kb on + strand, within Shewana3_1504 at 1751.576 kb on - strand, within Shewana3_1504 at 1751.576 kb on - strand, within Shewana3_1504 at 1751.576 kb on - strand, within Shewana3_1504 at 1751.666 kb on - strand, within Shewana3_1504 at 1752.398 kb on + strand at 1752.490 kb on + strand at 1752.498 kb on - strand at 1752.498 kb on - strand at 1752.498 kb on - strand at 1752.657 kb on - strand, within Shewana3_1506 at 1752.772 kb on + strand, within Shewana3_1506 at 1753.022 kb on + strand, within Shewana3_1506 at 1753.074 kb on + strand, within Shewana3_1506 at 1753.110 kb on + strand, within Shewana3_1506 at 1753.123 kb on + strand, within Shewana3_1506 at 1753.131 kb on - strand, within Shewana3_1506 at 1753.215 kb on - strand, within Shewana3_1506
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM remove 1,750,919 + Shewana3_1503 0.30 +1.0 1,750,919 + Shewana3_1503 0.30 +1.0 1,750,919 + Shewana3_1503 0.30 +1.0 1,750,919 + Shewana3_1503 0.30 -0.0 1,750,927 - Shewana3_1503 0.31 +0.4 1,751,052 - Shewana3_1503 0.46 -0.4 1,751,182 - Shewana3_1503 0.62 +0.5 1,751,262 - Shewana3_1503 0.72 +0.4 1,751,276 + Shewana3_1503 0.74 +1.0 1,751,284 + Shewana3_1503 0.75 +1.0 1,751,568 + Shewana3_1504 0.27 +1.0 1,751,576 - Shewana3_1504 0.30 -0.3 1,751,576 - Shewana3_1504 0.30 -0.1 1,751,576 - Shewana3_1504 0.30 -0.5 1,751,666 - Shewana3_1504 0.60 -0.5 1,752,398 + +0.4 1,752,490 + -0.4 1,752,498 - -0.6 1,752,498 - +1.0 1,752,498 - +0.0 1,752,657 - Shewana3_1506 0.16 +0.0 1,752,772 + Shewana3_1506 0.27 +1.0 1,753,022 + Shewana3_1506 0.51 +2.6 1,753,074 + Shewana3_1506 0.56 +0.3 1,753,110 + Shewana3_1506 0.60 -0.4 1,753,123 + Shewana3_1506 0.61 -0.7 1,753,131 - Shewana3_1506 0.62 +2.0 1,753,215 - Shewana3_1506 0.70 +1.0
Or see this region's nucleotide sequence