Experiment: Aluminum chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_R0066 and Shewana3_R0067 are separated by 99 nucleotides Shewana3_R0067 and Shewana3_R0068 are separated by 98 nucleotides Shewana3_R0068 and Shewana3_1419 are separated by 521 nucleotides Shewana3_1419 and Shewana3_1420 are separated by 181 nucleotides
Shewana3_R0066: Shewana3_R0066 - tRNA-Glu (RefSeq), at 1,646,424 to 1,646,499
_R0066
Shewana3_R0067: Shewana3_R0067 - tRNA-Glu (RefSeq), at 1,646,599 to 1,646,674
_R0067
Shewana3_R0068: Shewana3_R0068 - tRNA-Glu (RefSeq), at 1,646,773 to 1,646,848
_R0068
Shewana3_1419: Shewana3_1419 - ABC transporter related (RefSeq), at 1,647,370 to 1,649,199
_1419
Shewana3_1420: Shewana3_1420 - transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase / DNA-3-methyladenine glycosylase II (RefSeq), at 1,649,381 to 1,651,009
_1420
Position (kb)
1647
1648
1649
1650 Strain fitness (log2 ratio)
-1
0
1
2 at 1646.934 kb on + strand at 1647.145 kb on - strand at 1647.345 kb on - strand at 1647.412 kb on - strand at 1647.412 kb on - strand at 1647.450 kb on - strand at 1647.527 kb on - strand at 1647.675 kb on + strand, within Shewana3_1419 at 1647.701 kb on - strand, within Shewana3_1419 at 1647.841 kb on + strand, within Shewana3_1419 at 1647.869 kb on - strand, within Shewana3_1419 at 1648.283 kb on - strand, within Shewana3_1419 at 1648.333 kb on - strand, within Shewana3_1419 at 1648.335 kb on + strand, within Shewana3_1419 at 1648.394 kb on - strand, within Shewana3_1419 at 1648.479 kb on + strand, within Shewana3_1419 at 1648.567 kb on + strand, within Shewana3_1419 at 1648.618 kb on - strand, within Shewana3_1419 at 1648.943 kb on + strand, within Shewana3_1419 at 1648.968 kb on - strand, within Shewana3_1419 at 1649.075 kb on - strand at 1649.107 kb on - strand at 1649.320 kb on - strand at 1649.604 kb on + strand, within Shewana3_1420 at 1649.617 kb on + strand, within Shewana3_1420 at 1649.643 kb on + strand, within Shewana3_1420 at 1649.646 kb on - strand, within Shewana3_1420 at 1649.646 kb on - strand, within Shewana3_1420 at 1649.696 kb on + strand, within Shewana3_1420 at 1649.708 kb on + strand, within Shewana3_1420 at 1649.716 kb on - strand, within Shewana3_1420 at 1649.716 kb on - strand, within Shewana3_1420 at 1649.716 kb on - strand, within Shewana3_1420 at 1649.952 kb on - strand, within Shewana3_1420 at 1650.057 kb on + strand, within Shewana3_1420 at 1650.057 kb on + strand, within Shewana3_1420 at 1650.094 kb on + strand, within Shewana3_1420 at 1650.106 kb on + strand, within Shewana3_1420
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM remove 1,646,934 + +1.0 1,647,145 - +1.0 1,647,345 - -0.5 1,647,412 - -0.8 1,647,412 - -0.0 1,647,450 - -0.0 1,647,527 - -0.7 1,647,675 + Shewana3_1419 0.17 +1.0 1,647,701 - Shewana3_1419 0.18 +1.7 1,647,841 + Shewana3_1419 0.26 +1.0 1,647,869 - Shewana3_1419 0.27 +0.1 1,648,283 - Shewana3_1419 0.50 -0.5 1,648,333 - Shewana3_1419 0.53 +0.6 1,648,335 + Shewana3_1419 0.53 -0.0 1,648,394 - Shewana3_1419 0.56 +1.0 1,648,479 + Shewana3_1419 0.61 -0.0 1,648,567 + Shewana3_1419 0.65 +1.0 1,648,618 - Shewana3_1419 0.68 +1.0 1,648,943 + Shewana3_1419 0.86 -1.0 1,648,968 - Shewana3_1419 0.87 +0.2 1,649,075 - +2.0 1,649,107 - +1.0 1,649,320 - -0.0 1,649,604 + Shewana3_1420 0.14 +2.0 1,649,617 + Shewana3_1420 0.14 +1.0 1,649,643 + Shewana3_1420 0.16 +2.0 1,649,646 - Shewana3_1420 0.16 +1.0 1,649,646 - Shewana3_1420 0.16 -0.0 1,649,696 + Shewana3_1420 0.19 +1.0 1,649,708 + Shewana3_1420 0.20 +1.0 1,649,716 - Shewana3_1420 0.21 +1.0 1,649,716 - Shewana3_1420 0.21 +1.0 1,649,716 - Shewana3_1420 0.21 +1.0 1,649,952 - Shewana3_1420 0.35 +0.5 1,650,057 + Shewana3_1420 0.41 -1.2 1,650,057 + Shewana3_1420 0.41 +1.4 1,650,094 + Shewana3_1420 0.44 -0.6 1,650,106 + Shewana3_1420 0.45 +1.0
Or see this region's nucleotide sequence