Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1419

Experiment: Aluminum chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_R0066 and Shewana3_R0067 are separated by 99 nucleotidesShewana3_R0067 and Shewana3_R0068 are separated by 98 nucleotidesShewana3_R0068 and Shewana3_1419 are separated by 521 nucleotidesShewana3_1419 and Shewana3_1420 are separated by 181 nucleotides Shewana3_R0066: Shewana3_R0066 - tRNA-Glu (RefSeq), at 1,646,424 to 1,646,499 _R0066 Shewana3_R0067: Shewana3_R0067 - tRNA-Glu (RefSeq), at 1,646,599 to 1,646,674 _R0067 Shewana3_R0068: Shewana3_R0068 - tRNA-Glu (RefSeq), at 1,646,773 to 1,646,848 _R0068 Shewana3_1419: Shewana3_1419 - ABC transporter related (RefSeq), at 1,647,370 to 1,649,199 _1419 Shewana3_1420: Shewana3_1420 - transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase / DNA-3-methyladenine glycosylase II (RefSeq), at 1,649,381 to 1,651,009 _1420 Position (kb) 1647 1648 1649 1650Strain fitness (log2 ratio) -1 0 1 2at 1646.934 kb on + strandat 1647.145 kb on - strandat 1647.345 kb on - strandat 1647.412 kb on - strandat 1647.412 kb on - strandat 1647.450 kb on - strandat 1647.527 kb on - strandat 1647.675 kb on + strand, within Shewana3_1419at 1647.701 kb on - strand, within Shewana3_1419at 1647.841 kb on + strand, within Shewana3_1419at 1647.869 kb on - strand, within Shewana3_1419at 1648.283 kb on - strand, within Shewana3_1419at 1648.333 kb on - strand, within Shewana3_1419at 1648.335 kb on + strand, within Shewana3_1419at 1648.394 kb on - strand, within Shewana3_1419at 1648.479 kb on + strand, within Shewana3_1419at 1648.567 kb on + strand, within Shewana3_1419at 1648.618 kb on - strand, within Shewana3_1419at 1648.943 kb on + strand, within Shewana3_1419at 1648.968 kb on - strand, within Shewana3_1419at 1649.075 kb on - strandat 1649.107 kb on - strandat 1649.320 kb on - strandat 1649.604 kb on + strand, within Shewana3_1420at 1649.617 kb on + strand, within Shewana3_1420at 1649.643 kb on + strand, within Shewana3_1420at 1649.646 kb on - strand, within Shewana3_1420at 1649.646 kb on - strand, within Shewana3_1420at 1649.696 kb on + strand, within Shewana3_1420at 1649.708 kb on + strand, within Shewana3_1420at 1649.716 kb on - strand, within Shewana3_1420at 1649.716 kb on - strand, within Shewana3_1420at 1649.716 kb on - strand, within Shewana3_1420at 1649.952 kb on - strand, within Shewana3_1420at 1650.057 kb on + strand, within Shewana3_1420at 1650.057 kb on + strand, within Shewana3_1420at 1650.094 kb on + strand, within Shewana3_1420at 1650.106 kb on + strand, within Shewana3_1420

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
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1,646,934 + +1.0
1,647,145 - +1.0
1,647,345 - -0.5
1,647,412 - -0.8
1,647,412 - -0.0
1,647,450 - -0.0
1,647,527 - -0.7
1,647,675 + Shewana3_1419 0.17 +1.0
1,647,701 - Shewana3_1419 0.18 +1.7
1,647,841 + Shewana3_1419 0.26 +1.0
1,647,869 - Shewana3_1419 0.27 +0.1
1,648,283 - Shewana3_1419 0.50 -0.5
1,648,333 - Shewana3_1419 0.53 +0.6
1,648,335 + Shewana3_1419 0.53 -0.0
1,648,394 - Shewana3_1419 0.56 +1.0
1,648,479 + Shewana3_1419 0.61 -0.0
1,648,567 + Shewana3_1419 0.65 +1.0
1,648,618 - Shewana3_1419 0.68 +1.0
1,648,943 + Shewana3_1419 0.86 -1.0
1,648,968 - Shewana3_1419 0.87 +0.2
1,649,075 - +2.0
1,649,107 - +1.0
1,649,320 - -0.0
1,649,604 + Shewana3_1420 0.14 +2.0
1,649,617 + Shewana3_1420 0.14 +1.0
1,649,643 + Shewana3_1420 0.16 +2.0
1,649,646 - Shewana3_1420 0.16 +1.0
1,649,646 - Shewana3_1420 0.16 -0.0
1,649,696 + Shewana3_1420 0.19 +1.0
1,649,708 + Shewana3_1420 0.20 +1.0
1,649,716 - Shewana3_1420 0.21 +1.0
1,649,716 - Shewana3_1420 0.21 +1.0
1,649,716 - Shewana3_1420 0.21 +1.0
1,649,952 - Shewana3_1420 0.35 +0.5
1,650,057 + Shewana3_1420 0.41 -1.2
1,650,057 + Shewana3_1420 0.41 +1.4
1,650,094 + Shewana3_1420 0.44 -0.6
1,650,106 + Shewana3_1420 0.45 +1.0

Or see this region's nucleotide sequence