Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1414

Experiment: Aluminum chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1413 and Shewana3_1414 are separated by 98 nucleotidesShewana3_1414 and Shewana3_1415 overlap by 1 nucleotidesShewana3_1415 and Shewana3_1416 are separated by 62 nucleotides Shewana3_1413: Shewana3_1413 - ATPase domain-containing protein (RefSeq), at 1,636,818 to 1,638,629 _1413 Shewana3_1414: Shewana3_1414 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 1,638,728 to 1,640,125 _1414 Shewana3_1415: Shewana3_1415 - tripartite ATP-independent periplasmic transporter DctQ (RefSeq), at 1,640,125 to 1,640,769 _1415 Shewana3_1416: Shewana3_1416 - TRAP dicarboxylate transporter, DctP subunit (RefSeq), at 1,640,832 to 1,641,854 _1416 Position (kb) 1638 1639 1640 1641Strain fitness (log2 ratio) -2 -1 0 1 2at 1637.774 kb on + strand, within Shewana3_1413at 1637.841 kb on - strand, within Shewana3_1413at 1638.127 kb on + strand, within Shewana3_1413at 1638.178 kb on - strand, within Shewana3_1413at 1638.178 kb on - strand, within Shewana3_1413at 1638.180 kb on - strand, within Shewana3_1413at 1638.208 kb on + strand, within Shewana3_1413at 1638.208 kb on + strand, within Shewana3_1413at 1638.208 kb on + strand, within Shewana3_1413at 1638.285 kb on + strand, within Shewana3_1413at 1638.350 kb on + strand, within Shewana3_1413at 1638.350 kb on + strand, within Shewana3_1413at 1638.807 kb on + strandat 1638.817 kb on + strandat 1638.822 kb on + strandat 1638.832 kb on + strandat 1638.897 kb on - strand, within Shewana3_1414at 1638.929 kb on - strand, within Shewana3_1414at 1639.077 kb on - strand, within Shewana3_1414at 1639.093 kb on + strand, within Shewana3_1414at 1639.220 kb on - strand, within Shewana3_1414at 1639.282 kb on - strand, within Shewana3_1414at 1639.449 kb on + strand, within Shewana3_1414at 1639.475 kb on + strand, within Shewana3_1414at 1639.477 kb on - strand, within Shewana3_1414at 1639.662 kb on + strand, within Shewana3_1414at 1639.798 kb on - strand, within Shewana3_1414at 1639.821 kb on - strand, within Shewana3_1414at 1639.967 kb on - strand, within Shewana3_1414at 1640.246 kb on + strand, within Shewana3_1415at 1640.302 kb on + strand, within Shewana3_1415at 1640.391 kb on - strand, within Shewana3_1415at 1640.456 kb on - strand, within Shewana3_1415at 1640.574 kb on - strand, within Shewana3_1415at 1640.578 kb on + strand, within Shewana3_1415at 1640.588 kb on + strand, within Shewana3_1415at 1640.588 kb on + strand, within Shewana3_1415at 1640.625 kb on + strand, within Shewana3_1415at 1640.625 kb on + strand, within Shewana3_1415at 1640.633 kb on - strand, within Shewana3_1415at 1641.062 kb on + strand, within Shewana3_1416at 1641.105 kb on + strand, within Shewana3_1416at 1641.120 kb on + strand, within Shewana3_1416at 1641.123 kb on - strand, within Shewana3_1416

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
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1,637,774 + Shewana3_1413 0.53 -0.6
1,637,841 - Shewana3_1413 0.56 -0.6
1,638,127 + Shewana3_1413 0.72 -0.6
1,638,178 - Shewana3_1413 0.75 +1.0
1,638,178 - Shewana3_1413 0.75 +1.5
1,638,180 - Shewana3_1413 0.75 -0.0
1,638,208 + Shewana3_1413 0.77 +1.0
1,638,208 + Shewana3_1413 0.77 -0.6
1,638,208 + Shewana3_1413 0.77 +2.0
1,638,285 + Shewana3_1413 0.81 -0.6
1,638,350 + Shewana3_1413 0.85 -1.6
1,638,350 + Shewana3_1413 0.85 +1.0
1,638,807 + +0.2
1,638,817 + +1.0
1,638,822 + +1.0
1,638,832 + -0.8
1,638,897 - Shewana3_1414 0.12 -0.1
1,638,929 - Shewana3_1414 0.14 -0.8
1,639,077 - Shewana3_1414 0.25 -0.6
1,639,093 + Shewana3_1414 0.26 -2.0
1,639,220 - Shewana3_1414 0.35 -0.6
1,639,282 - Shewana3_1414 0.40 +1.0
1,639,449 + Shewana3_1414 0.52 -0.0
1,639,475 + Shewana3_1414 0.53 -2.2
1,639,477 - Shewana3_1414 0.54 -0.6
1,639,662 + Shewana3_1414 0.67 -0.6
1,639,798 - Shewana3_1414 0.77 +0.2
1,639,821 - Shewana3_1414 0.78 -0.0
1,639,967 - Shewana3_1414 0.89 +1.0
1,640,246 + Shewana3_1415 0.19 +1.0
1,640,302 + Shewana3_1415 0.27 -0.6
1,640,391 - Shewana3_1415 0.41 -0.0
1,640,456 - Shewana3_1415 0.51 -0.6
1,640,574 - Shewana3_1415 0.70 -0.8
1,640,578 + Shewana3_1415 0.70 -1.4
1,640,588 + Shewana3_1415 0.72 -0.4
1,640,588 + Shewana3_1415 0.72 +1.0
1,640,625 + Shewana3_1415 0.78 -0.5
1,640,625 + Shewana3_1415 0.78 +1.1
1,640,633 - Shewana3_1415 0.79 +1.0
1,641,062 + Shewana3_1416 0.22 +1.0
1,641,105 + Shewana3_1416 0.27 -0.0
1,641,120 + Shewana3_1416 0.28 -0.0
1,641,123 - Shewana3_1416 0.28 -0.5

Or see this region's nucleotide sequence