Experiment: Aluminum chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1293 and Shewana3_1294 are separated by 259 nucleotides Shewana3_1294 and Shewana3_1295 overlap by 16 nucleotides Shewana3_1295 and Shewana3_1296 are separated by 2 nucleotides
Shewana3_1293: Shewana3_1293 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 1,504,135 to 1,506,138
_1293
Shewana3_1294: Shewana3_1294 - hypothetical protein (RefSeq), at 1,506,398 to 1,506,643
_1294
Shewana3_1295: Shewana3_1295 - acriflavin resistance protein (RefSeq), at 1,506,628 to 1,509,708
_1295
Shewana3_1296: Shewana3_1296 - RND family efflux transporter MFP subunit (RefSeq), at 1,509,711 to 1,510,832
_1296
Position (kb)
1506
1507
1508
1509
1510 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1505.651 kb on - strand, within Shewana3_1293 at 1506.084 kb on + strand at 1506.148 kb on - strand at 1506.253 kb on + strand at 1506.253 kb on + strand at 1506.253 kb on + strand at 1506.257 kb on + strand at 1506.299 kb on + strand at 1506.311 kb on + strand at 1506.347 kb on + strand at 1506.347 kb on + strand at 1506.359 kb on + strand at 1506.401 kb on - strand at 1506.504 kb on + strand, within Shewana3_1294 at 1506.654 kb on - strand at 1506.707 kb on + strand at 1506.759 kb on + strand at 1506.770 kb on + strand at 1506.876 kb on + strand at 1506.954 kb on + strand, within Shewana3_1295 at 1507.071 kb on + strand, within Shewana3_1295 at 1507.079 kb on - strand, within Shewana3_1295 at 1507.129 kb on - strand, within Shewana3_1295 at 1507.172 kb on - strand, within Shewana3_1295 at 1507.341 kb on + strand, within Shewana3_1295 at 1507.342 kb on - strand, within Shewana3_1295 at 1507.356 kb on + strand, within Shewana3_1295 at 1507.759 kb on + strand, within Shewana3_1295 at 1507.852 kb on - strand, within Shewana3_1295 at 1508.306 kb on - strand, within Shewana3_1295 at 1508.374 kb on + strand, within Shewana3_1295 at 1508.394 kb on - strand, within Shewana3_1295 at 1508.418 kb on + strand, within Shewana3_1295 at 1508.584 kb on + strand, within Shewana3_1295 at 1508.592 kb on - strand, within Shewana3_1295 at 1508.638 kb on + strand, within Shewana3_1295 at 1509.132 kb on + strand, within Shewana3_1295 at 1509.236 kb on + strand, within Shewana3_1295 at 1509.285 kb on - strand, within Shewana3_1295 at 1509.381 kb on - strand, within Shewana3_1295 at 1509.408 kb on - strand at 1509.466 kb on - strand at 1509.561 kb on + strand at 1509.567 kb on + strand at 1509.659 kb on - strand at 1509.667 kb on - strand at 1509.773 kb on - strand at 1509.774 kb on + strand at 1509.819 kb on + strand at 1509.829 kb on + strand, within Shewana3_1296 at 1509.837 kb on - strand, within Shewana3_1296 at 1509.981 kb on + strand, within Shewana3_1296 at 1510.185 kb on + strand, within Shewana3_1296 at 1510.218 kb on + strand, within Shewana3_1296 at 1510.226 kb on - strand, within Shewana3_1296 at 1510.226 kb on - strand, within Shewana3_1296 at 1510.254 kb on - strand, within Shewana3_1296 at 1510.576 kb on - strand, within Shewana3_1296 at 1510.647 kb on + strand, within Shewana3_1296 at 1510.665 kb on - strand, within Shewana3_1296
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM remove 1,505,651 - Shewana3_1293 0.76 +1.0 1,506,084 + +0.1 1,506,148 - +0.2 1,506,253 + +0.5 1,506,253 + -0.7 1,506,253 + -0.5 1,506,257 + -0.5 1,506,299 + +1.0 1,506,311 + -1.2 1,506,347 + -0.4 1,506,347 + +0.1 1,506,359 + +0.0 1,506,401 - +2.0 1,506,504 + Shewana3_1294 0.43 -1.3 1,506,654 - -0.3 1,506,707 + -1.8 1,506,759 + +1.2 1,506,770 + +0.2 1,506,876 + +0.1 1,506,954 + Shewana3_1295 0.11 -1.0 1,507,071 + Shewana3_1295 0.14 -0.5 1,507,079 - Shewana3_1295 0.15 +0.4 1,507,129 - Shewana3_1295 0.16 -0.8 1,507,172 - Shewana3_1295 0.18 +1.5 1,507,341 + Shewana3_1295 0.23 +0.2 1,507,342 - Shewana3_1295 0.23 -0.5 1,507,356 + Shewana3_1295 0.24 -0.3 1,507,759 + Shewana3_1295 0.37 -1.0 1,507,852 - Shewana3_1295 0.40 -2.0 1,508,306 - Shewana3_1295 0.54 +1.0 1,508,374 + Shewana3_1295 0.57 -0.4 1,508,394 - Shewana3_1295 0.57 +1.0 1,508,418 + Shewana3_1295 0.58 -0.4 1,508,584 + Shewana3_1295 0.63 +1.0 1,508,592 - Shewana3_1295 0.64 +0.1 1,508,638 + Shewana3_1295 0.65 -0.5 1,509,132 + Shewana3_1295 0.81 -0.4 1,509,236 + Shewana3_1295 0.85 +0.1 1,509,285 - Shewana3_1295 0.86 -0.0 1,509,381 - Shewana3_1295 0.89 +1.0 1,509,408 - -0.6 1,509,466 - -0.0 1,509,561 + +0.1 1,509,567 + -0.2 1,509,659 - -1.5 1,509,667 - +0.1 1,509,773 - -0.0 1,509,774 + +1.0 1,509,819 + -1.1 1,509,829 + Shewana3_1296 0.11 +1.0 1,509,837 - Shewana3_1296 0.11 +1.0 1,509,981 + Shewana3_1296 0.24 +3.0 1,510,185 + Shewana3_1296 0.42 -0.5 1,510,218 + Shewana3_1296 0.45 -0.1 1,510,226 - Shewana3_1296 0.46 -0.6 1,510,226 - Shewana3_1296 0.46 -0.7 1,510,254 - Shewana3_1296 0.48 -0.0 1,510,576 - Shewana3_1296 0.77 +0.4 1,510,647 + Shewana3_1296 0.83 +1.0 1,510,665 - Shewana3_1296 0.85 +0.5
Or see this region's nucleotide sequence