Experiment: Aluminum chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1172 and Shewana3_1173 are separated by 53 nucleotides Shewana3_1173 and Shewana3_1174 overlap by 13 nucleotides Shewana3_1174 and Shewana3_1175 are separated by 84 nucleotides Shewana3_1175 and Shewana3_1176 are separated by 94 nucleotides Shewana3_1176 and Shewana3_1177 are separated by 153 nucleotides
Shewana3_1172: Shewana3_1172 - hypothetical protein (RefSeq), at 1,383,006 to 1,383,551
_1172
Shewana3_1173: Shewana3_1173 - hypothetical protein (RefSeq), at 1,383,605 to 1,384,177
_1173
Shewana3_1174: Shewana3_1174 - hypothetical protein (RefSeq), at 1,384,165 to 1,384,713
_1174
Shewana3_1175: Shewana3_1175 - hypothetical protein (RefSeq), at 1,384,798 to 1,385,019
_1175
Shewana3_1176: Shewana3_1176 - hypothetical protein (RefSeq), at 1,385,114 to 1,385,458
_1176
Shewana3_1177: Shewana3_1177 - hypothetical protein (RefSeq), at 1,385,612 to 1,385,797
_1177
Position (kb)
1384
1385 Strain fitness (log2 ratio)
-1
0
1 at 1383.187 kb on + strand, within Shewana3_1172 at 1383.396 kb on + strand, within Shewana3_1172 at 1383.532 kb on + strand at 1383.553 kb on + strand at 1383.667 kb on + strand, within Shewana3_1173 at 1383.732 kb on + strand, within Shewana3_1173 at 1383.777 kb on + strand, within Shewana3_1173 at 1383.785 kb on - strand, within Shewana3_1173 at 1384.207 kb on + strand at 1384.209 kb on - strand at 1384.475 kb on + strand, within Shewana3_1174 at 1384.538 kb on + strand, within Shewana3_1174 at 1384.564 kb on + strand, within Shewana3_1174 at 1384.766 kb on + strand at 1384.774 kb on - strand at 1384.774 kb on - strand at 1384.789 kb on - strand at 1384.942 kb on - strand, within Shewana3_1175 at 1385.049 kb on + strand at 1385.140 kb on - strand at 1385.464 kb on - strand at 1385.565 kb on + strand at 1385.573 kb on - strand at 1385.573 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM remove 1,383,187 + Shewana3_1172 0.33 +0.6 1,383,396 + Shewana3_1172 0.71 -0.5 1,383,532 + -0.3 1,383,553 + -0.3 1,383,667 + Shewana3_1173 0.11 -0.4 1,383,732 + Shewana3_1173 0.22 -0.0 1,383,777 + Shewana3_1173 0.30 -0.1 1,383,785 - Shewana3_1173 0.31 +0.0 1,384,207 + +0.0 1,384,209 - -1.3 1,384,475 + Shewana3_1174 0.56 -0.8 1,384,538 + Shewana3_1174 0.68 -1.0 1,384,564 + Shewana3_1174 0.73 -0.6 1,384,766 + +0.2 1,384,774 - -0.1 1,384,774 - +1.0 1,384,789 - +1.0 1,384,942 - Shewana3_1175 0.65 +1.0 1,385,049 + -0.4 1,385,140 - +0.5 1,385,464 - +0.1 1,385,565 + -1.3 1,385,573 - +0.0 1,385,573 - +0.2
Or see this region's nucleotide sequence