Experiment: Aluminum chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1072 and Shewana3_1073 are separated by 116 nucleotides Shewana3_1073 and Shewana3_1074 are separated by 15 nucleotides
Shewana3_1072: Shewana3_1072 - adenylosuccinate synthetase (RefSeq), at 1,257,627 to 1,258,883
_1072
Shewana3_1073: Shewana3_1073 - LysR family transcriptional regulator (RefSeq), at 1,259,000 to 1,259,908
_1073
Shewana3_1074: Shewana3_1074 - extracellular solute-binding protein (RefSeq), at 1,259,924 to 1,260,742
_1074
Position (kb)
1258
1259
1260 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1258.074 kb on + strand, within Shewana3_1072 at 1258.094 kb on - strand, within Shewana3_1072 at 1258.126 kb on + strand, within Shewana3_1072 at 1258.139 kb on - strand, within Shewana3_1072 at 1258.171 kb on + strand, within Shewana3_1072 at 1258.194 kb on - strand, within Shewana3_1072 at 1258.518 kb on - strand, within Shewana3_1072 at 1258.575 kb on - strand, within Shewana3_1072 at 1258.575 kb on - strand, within Shewana3_1072 at 1258.580 kb on - strand, within Shewana3_1072 at 1258.587 kb on - strand, within Shewana3_1072 at 1258.609 kb on - strand, within Shewana3_1072 at 1258.914 kb on + strand at 1259.092 kb on + strand, within Shewana3_1073 at 1259.112 kb on - strand, within Shewana3_1073 at 1259.285 kb on + strand, within Shewana3_1073 at 1259.383 kb on + strand, within Shewana3_1073 at 1259.391 kb on - strand, within Shewana3_1073 at 1259.495 kb on - strand, within Shewana3_1073 at 1259.778 kb on - strand, within Shewana3_1073 at 1259.820 kb on - strand at 1259.866 kb on + strand at 1259.869 kb on - strand at 1259.929 kb on - strand at 1259.931 kb on - strand at 1259.951 kb on - strand at 1260.273 kb on - strand, within Shewana3_1074 at 1260.390 kb on - strand, within Shewana3_1074 at 1260.395 kb on - strand, within Shewana3_1074 at 1260.455 kb on + strand, within Shewana3_1074 at 1260.530 kb on + strand, within Shewana3_1074 at 1260.600 kb on + strand, within Shewana3_1074 at 1260.601 kb on - strand, within Shewana3_1074
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM remove 1,258,074 + Shewana3_1072 0.36 -0.5 1,258,094 - Shewana3_1072 0.37 -0.5 1,258,126 + Shewana3_1072 0.40 -0.5 1,258,139 - Shewana3_1072 0.41 -0.1 1,258,171 + Shewana3_1072 0.43 +0.5 1,258,194 - Shewana3_1072 0.45 -0.5 1,258,518 - Shewana3_1072 0.71 -0.2 1,258,575 - Shewana3_1072 0.75 +0.7 1,258,575 - Shewana3_1072 0.75 -0.6 1,258,580 - Shewana3_1072 0.76 +0.2 1,258,587 - Shewana3_1072 0.76 +1.1 1,258,609 - Shewana3_1072 0.78 -0.4 1,258,914 + -1.3 1,259,092 + Shewana3_1073 0.10 +0.0 1,259,112 - Shewana3_1073 0.12 +1.0 1,259,285 + Shewana3_1073 0.31 -2.4 1,259,383 + Shewana3_1073 0.42 -1.0 1,259,391 - Shewana3_1073 0.43 -0.3 1,259,495 - Shewana3_1073 0.54 +1.0 1,259,778 - Shewana3_1073 0.86 +0.0 1,259,820 - +1.0 1,259,866 + -1.5 1,259,869 - -0.5 1,259,929 - +2.6 1,259,931 - -0.3 1,259,951 - +1.0 1,260,273 - Shewana3_1074 0.43 +1.0 1,260,390 - Shewana3_1074 0.57 -0.3 1,260,395 - Shewana3_1074 0.58 +0.3 1,260,455 + Shewana3_1074 0.65 -0.8 1,260,530 + Shewana3_1074 0.74 -0.1 1,260,600 + Shewana3_1074 0.83 +0.1 1,260,601 - Shewana3_1074 0.83 -0.2
Or see this region's nucleotide sequence