Experiment: Aluminum chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1062 and Shewana3_1063 are separated by 704 nucleotides Shewana3_1063 and Shewana3_1064 are separated by 34 nucleotides Shewana3_1064 and Shewana3_1065 overlap by 14 nucleotides
Shewana3_1062: Shewana3_1062 - nucleoside recognition domain-containing protein (RefSeq), at 1,247,092 to 1,248,450
_1062
Shewana3_1063: Shewana3_1063 - hypothetical protein (RefSeq), at 1,249,155 to 1,249,871
_1063
Shewana3_1064: Shewana3_1064 - peptidase U32 (RefSeq), at 1,249,906 to 1,250,823
_1064
Shewana3_1065: Shewana3_1065 - peptidase U32 (RefSeq), at 1,250,810 to 1,251,811
_1065
Position (kb)
1249
1250 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1248.155 kb on + strand, within Shewana3_1062 at 1248.250 kb on - strand, within Shewana3_1062 at 1248.288 kb on - strand, within Shewana3_1062 at 1248.312 kb on - strand, within Shewana3_1062 at 1248.373 kb on - strand at 1248.422 kb on + strand at 1248.453 kb on + strand at 1248.460 kb on + strand at 1248.468 kb on - strand at 1249.105 kb on - strand at 1249.122 kb on + strand at 1249.251 kb on - strand, within Shewana3_1063 at 1249.580 kb on + strand, within Shewana3_1063 at 1249.600 kb on - strand, within Shewana3_1063 at 1249.703 kb on + strand, within Shewana3_1063 at 1249.703 kb on + strand, within Shewana3_1063 at 1249.880 kb on - strand at 1250.032 kb on + strand, within Shewana3_1064 at 1250.250 kb on + strand, within Shewana3_1064 at 1250.258 kb on - strand, within Shewana3_1064 at 1250.348 kb on + strand, within Shewana3_1064 at 1250.356 kb on - strand, within Shewana3_1064 at 1250.356 kb on - strand, within Shewana3_1064 at 1250.356 kb on - strand, within Shewana3_1064 at 1250.358 kb on + strand, within Shewana3_1064 at 1250.358 kb on + strand, within Shewana3_1064 at 1250.358 kb on + strand, within Shewana3_1064 at 1250.358 kb on + strand, within Shewana3_1064 at 1250.366 kb on - strand, within Shewana3_1064 at 1250.366 kb on - strand, within Shewana3_1064 at 1250.833 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM remove 1,248,155 + Shewana3_1062 0.78 +1.4 1,248,250 - Shewana3_1062 0.85 -0.1 1,248,288 - Shewana3_1062 0.88 -0.3 1,248,312 - Shewana3_1062 0.90 -0.2 1,248,373 - -0.4 1,248,422 + +0.1 1,248,453 + -0.3 1,248,460 + -0.8 1,248,468 - +0.1 1,249,105 - +0.1 1,249,122 + +1.3 1,249,251 - Shewana3_1063 0.13 +1.1 1,249,580 + Shewana3_1063 0.59 -0.9 1,249,600 - Shewana3_1063 0.62 -0.2 1,249,703 + Shewana3_1063 0.76 -0.6 1,249,703 + Shewana3_1063 0.76 -0.8 1,249,880 - +0.0 1,250,032 + Shewana3_1064 0.14 +0.5 1,250,250 + Shewana3_1064 0.37 +0.2 1,250,258 - Shewana3_1064 0.38 -0.5 1,250,348 + Shewana3_1064 0.48 -0.3 1,250,356 - Shewana3_1064 0.49 +0.2 1,250,356 - Shewana3_1064 0.49 +0.9 1,250,356 - Shewana3_1064 0.49 -0.2 1,250,358 + Shewana3_1064 0.49 -0.4 1,250,358 + Shewana3_1064 0.49 -1.8 1,250,358 + Shewana3_1064 0.49 -0.6 1,250,358 + Shewana3_1064 0.49 +0.4 1,250,366 - Shewana3_1064 0.50 -2.9 1,250,366 - Shewana3_1064 0.50 +0.2 1,250,833 + -0.2
Or see this region's nucleotide sequence