Experiment: Aluminum chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0980 and Shewana3_0981 are separated by 44 nucleotides Shewana3_0981 and Shewana3_R0030 are separated by 305 nucleotides Shewana3_R0030 and Shewana3_0982 are separated by 170 nucleotides Shewana3_0982 and Shewana3_0983 are separated by 60 nucleotides
Shewana3_0980: Shewana3_0980 - 3'-5' exonuclease (RefSeq), at 1,150,972 to 1,151,883
_0980
Shewana3_0981: Shewana3_0981 - hypothetical protein (RefSeq), at 1,151,928 to 1,152,896
_0981
Shewana3_R0030: Shewana3_R0030 - tRNA-Trp (RefSeq), at 1,153,202 to 1,153,278
_R0030
Shewana3_0982: Shewana3_0982 - hypothetical protein (RefSeq), at 1,153,449 to 1,153,727
_0982
Shewana3_0983: Shewana3_0983 - TonB-dependent siderophore receptor (RefSeq), at 1,153,788 to 1,155,959
_0983
Position (kb)
1151
1152
1153 Strain fitness (log2 ratio)
-2
-1
0
1 at 1151.215 kb on - strand, within Shewana3_0980 at 1151.366 kb on + strand, within Shewana3_0980 at 1151.374 kb on - strand, within Shewana3_0980 at 1151.374 kb on - strand, within Shewana3_0980 at 1151.477 kb on - strand, within Shewana3_0980 at 1151.539 kb on - strand, within Shewana3_0980 at 1151.841 kb on + strand at 1151.884 kb on + strand at 1152.081 kb on + strand, within Shewana3_0981 at 1152.264 kb on + strand, within Shewana3_0981 at 1152.344 kb on - strand, within Shewana3_0981 at 1152.407 kb on - strand, within Shewana3_0981 at 1152.638 kb on - strand, within Shewana3_0981 at 1152.762 kb on + strand, within Shewana3_0981 at 1153.079 kb on + strand at 1153.401 kb on - strand at 1153.437 kb on - strand at 1153.465 kb on + strand at 1153.835 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM remove 1,151,215 - Shewana3_0980 0.27 +1.1 1,151,366 + Shewana3_0980 0.43 +0.1 1,151,374 - Shewana3_0980 0.44 +0.3 1,151,374 - Shewana3_0980 0.44 -1.1 1,151,477 - Shewana3_0980 0.55 -0.0 1,151,539 - Shewana3_0980 0.62 +1.1 1,151,841 + +0.0 1,151,884 + +1.1 1,152,081 + Shewana3_0981 0.16 +0.1 1,152,264 + Shewana3_0981 0.35 -0.5 1,152,344 - Shewana3_0981 0.43 -0.8 1,152,407 - Shewana3_0981 0.49 +0.2 1,152,638 - Shewana3_0981 0.73 -1.2 1,152,762 + Shewana3_0981 0.86 -0.1 1,153,079 + +0.2 1,153,401 - +1.1 1,153,437 - +1.1 1,153,465 + +1.1 1,153,835 - -1.8
Or see this region's nucleotide sequence