Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0305

Experiment: Aluminum chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0303 and Shewana3_0304 are separated by 44 nucleotidesShewana3_0304 and Shewana3_0305 are separated by 10 nucleotidesShewana3_0305 and Shewana3_0306 are separated by 353 nucleotides Shewana3_0303: Shewana3_0303 - short-chain dehydrogenase/reductase SDR (RefSeq), at 339,908 to 340,669 _0303 Shewana3_0304: Shewana3_0304 - hypothetical protein (RefSeq), at 340,714 to 341,220 _0304 Shewana3_0305: Shewana3_0305 - alcohol dehydrogenase (RefSeq), at 341,231 to 342,307 _0305 Shewana3_0306: Shewana3_0306 - catalase/peroxidase HPI (RefSeq), at 342,661 to 344,847 _0306 Position (kb) 341 342 343Strain fitness (log2 ratio) -2 -1 0 1at 340.297 kb on - strand, within Shewana3_0303at 340.297 kb on - strand, within Shewana3_0303at 340.352 kb on - strand, within Shewana3_0303at 340.424 kb on - strand, within Shewana3_0303at 340.470 kb on + strand, within Shewana3_0303at 340.470 kb on + strand, within Shewana3_0303at 340.470 kb on + strand, within Shewana3_0303at 340.470 kb on + strand, within Shewana3_0303at 340.472 kb on + strand, within Shewana3_0303at 340.485 kb on + strand, within Shewana3_0303at 340.523 kb on + strand, within Shewana3_0303at 340.634 kb on - strandat 340.680 kb on + strandat 340.952 kb on + strand, within Shewana3_0304at 341.016 kb on + strand, within Shewana3_0304at 341.128 kb on + strand, within Shewana3_0304at 341.418 kb on + strand, within Shewana3_0305at 341.476 kb on + strand, within Shewana3_0305at 341.477 kb on - strand, within Shewana3_0305at 341.555 kb on + strand, within Shewana3_0305at 341.563 kb on - strand, within Shewana3_0305at 341.594 kb on - strand, within Shewana3_0305at 341.605 kb on - strand, within Shewana3_0305at 341.652 kb on - strand, within Shewana3_0305at 341.708 kb on + strand, within Shewana3_0305at 341.895 kb on + strand, within Shewana3_0305at 341.951 kb on - strand, within Shewana3_0305at 342.467 kb on + strandat 342.486 kb on + strandat 342.486 kb on + strandat 342.486 kb on + strandat 342.600 kb on - strandat 342.821 kb on + strandat 342.837 kb on - strandat 342.837 kb on - strandat 342.839 kb on + strandat 342.898 kb on - strand, within Shewana3_0306at 342.958 kb on + strand, within Shewana3_0306at 343.071 kb on + strand, within Shewana3_0306at 343.152 kb on + strand, within Shewana3_0306at 343.152 kb on - strand, within Shewana3_0306

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
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340,297 - Shewana3_0303 0.51 +0.1
340,297 - Shewana3_0303 0.51 -0.1
340,352 - Shewana3_0303 0.58 +0.3
340,424 - Shewana3_0303 0.68 +0.8
340,470 + Shewana3_0303 0.74 +0.2
340,470 + Shewana3_0303 0.74 -0.3
340,470 + Shewana3_0303 0.74 -0.1
340,470 + Shewana3_0303 0.74 +0.1
340,472 + Shewana3_0303 0.74 -0.1
340,485 + Shewana3_0303 0.76 +0.3
340,523 + Shewana3_0303 0.81 -1.6
340,634 - +0.1
340,680 + -0.1
340,952 + Shewana3_0304 0.47 -0.2
341,016 + Shewana3_0304 0.60 -0.6
341,128 + Shewana3_0304 0.82 -0.3
341,418 + Shewana3_0305 0.17 -0.1
341,476 + Shewana3_0305 0.23 +0.5
341,477 - Shewana3_0305 0.23 -0.1
341,555 + Shewana3_0305 0.30 -0.2
341,563 - Shewana3_0305 0.31 -0.0
341,594 - Shewana3_0305 0.34 +0.5
341,605 - Shewana3_0305 0.35 +0.2
341,652 - Shewana3_0305 0.39 -0.2
341,708 + Shewana3_0305 0.44 -0.3
341,895 + Shewana3_0305 0.62 -0.2
341,951 - Shewana3_0305 0.67 +0.7
342,467 + -0.0
342,486 + -1.8
342,486 + -0.0
342,486 + -0.0
342,600 - -0.6
342,821 + -0.0
342,837 - -0.5
342,837 - -0.0
342,839 + -0.3
342,898 - Shewana3_0306 0.11 +0.2
342,958 + Shewana3_0306 0.14 -1.3
343,071 + Shewana3_0306 0.19 -0.4
343,152 + Shewana3_0306 0.22 +0.5
343,152 - Shewana3_0306 0.22 -0.1

Or see this region's nucleotide sequence