Experiment: Cephalothin 0.00390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_1588 and pmbA are separated by 146 nucleotides pmbA and Synpcc7942_1590 are separated by 3 nucleotides Synpcc7942_1590 and nbp1 are separated by 3 nucleotides
Synpcc7942_1588: Synpcc7942_1588 - CBS, at 1,653,255 to 1,655,834
_1588
Synpcc7942_1589: pmbA - putative modulator of DNA gyrase, at 1,655,981 to 1,657,270
pmbA
Synpcc7942_1590: Synpcc7942_1590 - hypothetical protein, at 1,657,274 to 1,658,131
_1590
Synpcc7942_1591: nbp1 - RNA binding S1, at 1,658,135 to 1,659,022
nbp1
Position (kb) 1655
1656
1657
1658 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 1655.003 kb on + strand, within Synpcc7942_1588 at 1655.003 kb on + strand, within Synpcc7942_1588 at 1655.003 kb on - strand, within Synpcc7942_1588 at 1655.006 kb on - strand, within Synpcc7942_1588 at 1655.011 kb on - strand, within Synpcc7942_1588 at 1655.069 kb on + strand, within Synpcc7942_1588 at 1655.075 kb on - strand, within Synpcc7942_1588 at 1655.075 kb on - strand, within Synpcc7942_1588 at 1655.077 kb on - strand, within Synpcc7942_1588 at 1655.077 kb on - strand, within Synpcc7942_1588 at 1655.079 kb on + strand, within Synpcc7942_1588 at 1655.133 kb on - strand, within Synpcc7942_1588 at 1655.143 kb on - strand, within Synpcc7942_1588 at 1655.143 kb on - strand, within Synpcc7942_1588 at 1655.150 kb on - strand, within Synpcc7942_1588 at 1655.150 kb on - strand, within Synpcc7942_1588 at 1655.159 kb on + strand, within Synpcc7942_1588 at 1655.167 kb on - strand, within Synpcc7942_1588 at 1655.167 kb on - strand, within Synpcc7942_1588 at 1655.177 kb on - strand, within Synpcc7942_1588 at 1655.250 kb on + strand, within Synpcc7942_1588 at 1655.250 kb on + strand, within Synpcc7942_1588 at 1655.257 kb on + strand, within Synpcc7942_1588 at 1655.258 kb on - strand, within Synpcc7942_1588 at 1655.280 kb on - strand, within Synpcc7942_1588 at 1655.286 kb on + strand, within Synpcc7942_1588 at 1655.288 kb on - strand, within Synpcc7942_1588 at 1655.296 kb on + strand, within Synpcc7942_1588 at 1655.296 kb on + strand, within Synpcc7942_1588 at 1655.301 kb on - strand, within Synpcc7942_1588 at 1655.304 kb on - strand, within Synpcc7942_1588 at 1655.321 kb on + strand, within Synpcc7942_1588 at 1655.339 kb on - strand, within Synpcc7942_1588 at 1655.339 kb on - strand, within Synpcc7942_1588 at 1655.339 kb on - strand, within Synpcc7942_1588 at 1655.390 kb on - strand, within Synpcc7942_1588 at 1655.418 kb on + strand, within Synpcc7942_1588 at 1655.426 kb on - strand at 1655.427 kb on + strand, within Synpcc7942_1588 at 1655.459 kb on + strand, within Synpcc7942_1588 at 1655.467 kb on - strand, within Synpcc7942_1588 at 1655.469 kb on - strand, within Synpcc7942_1588 at 1655.486 kb on + strand, within Synpcc7942_1588 at 1655.487 kb on + strand, within Synpcc7942_1588 at 1655.491 kb on + strand, within Synpcc7942_1588 at 1655.494 kb on + strand, within Synpcc7942_1588 at 1655.494 kb on - strand, within Synpcc7942_1588 at 1655.494 kb on - strand, within Synpcc7942_1588 at 1655.494 kb on - strand, within Synpcc7942_1588 at 1655.494 kb on - strand, within Synpcc7942_1588 at 1655.540 kb on + strand, within Synpcc7942_1588 at 1655.541 kb on + strand, within Synpcc7942_1588 at 1655.541 kb on + strand, within Synpcc7942_1588 at 1655.541 kb on + strand, within Synpcc7942_1588 at 1655.548 kb on - strand, within Synpcc7942_1588 at 1655.549 kb on - strand, within Synpcc7942_1588 at 1655.571 kb on + strand, within Synpcc7942_1588 at 1655.577 kb on + strand at 1655.579 kb on - strand at 1655.584 kb on - strand at 1655.616 kb on - strand at 1655.624 kb on - strand at 1655.664 kb on + strand at 1655.716 kb on + strand at 1655.730 kb on + strand at 1655.748 kb on - strand at 1655.749 kb on + strand at 1655.773 kb on + strand at 1655.775 kb on + strand at 1655.783 kb on - strand at 1655.785 kb on + strand at 1655.785 kb on + strand at 1655.785 kb on + strand at 1655.793 kb on - strand at 1655.793 kb on - strand at 1655.842 kb on - strand at 1655.844 kb on - strand at 1655.852 kb on + strand at 1655.860 kb on - strand at 1655.874 kb on - strand at 1655.911 kb on + strand at 1655.941 kb on + strand at 1655.947 kb on + strand at 1655.949 kb on + strand at 1655.986 kb on - strand at 1655.991 kb on - strand at 1656.001 kb on - strand at 1656.027 kb on + strand at 1656.027 kb on + strand at 1656.027 kb on + strand at 1656.027 kb on + strand at 1656.027 kb on + strand at 1656.062 kb on - strand at 1656.084 kb on + strand at 1656.092 kb on - strand at 1656.092 kb on - strand at 1656.152 kb on + strand, within pmbA at 1656.152 kb on + strand, within pmbA at 1656.155 kb on - strand, within pmbA at 1656.157 kb on + strand, within pmbA at 1656.165 kb on - strand, within pmbA at 1656.165 kb on - strand, within pmbA at 1656.205 kb on + strand, within pmbA at 1656.205 kb on + strand, within pmbA at 1656.220 kb on + strand, within pmbA at 1656.242 kb on + strand, within pmbA at 1656.250 kb on - strand, within pmbA at 1656.260 kb on - strand, within pmbA at 1656.271 kb on + strand, within pmbA at 1656.271 kb on + strand, within pmbA at 1656.271 kb on + strand, within pmbA at 1656.271 kb on + strand, within pmbA at 1656.282 kb on + strand, within pmbA at 1656.282 kb on + strand, within pmbA at 1656.284 kb on - strand, within pmbA at 1656.290 kb on - strand, within pmbA at 1656.314 kb on - strand, within pmbA at 1656.319 kb on - strand, within pmbA at 1656.319 kb on - strand, within pmbA at 1656.377 kb on + strand, within pmbA at 1656.377 kb on + strand, within pmbA at 1656.452 kb on + strand, within pmbA at 1656.452 kb on + strand, within pmbA at 1656.459 kb on + strand, within pmbA at 1656.460 kb on - strand, within pmbA at 1656.466 kb on + strand, within pmbA at 1656.474 kb on + strand, within pmbA at 1656.534 kb on + strand, within pmbA at 1656.536 kb on + strand, within pmbA at 1656.550 kb on - strand, within pmbA at 1656.558 kb on - strand, within pmbA at 1656.558 kb on - strand, within pmbA at 1656.560 kb on + strand, within pmbA at 1656.560 kb on + strand, within pmbA at 1656.560 kb on + strand, within pmbA at 1656.568 kb on - strand, within pmbA at 1656.579 kb on + strand, within pmbA at 1656.587 kb on + strand, within pmbA at 1656.616 kb on + strand, within pmbA at 1656.619 kb on - strand, within pmbA at 1656.624 kb on - strand, within pmbA at 1656.629 kb on + strand, within pmbA at 1656.629 kb on + strand, within pmbA at 1656.629 kb on + strand, within pmbA at 1656.637 kb on - strand, within pmbA at 1656.642 kb on + strand, within pmbA at 1656.650 kb on - strand, within pmbA at 1656.660 kb on - strand, within pmbA at 1656.660 kb on - strand, within pmbA at 1656.660 kb on - strand, within pmbA at 1656.716 kb on + strand, within pmbA at 1656.716 kb on + strand, within pmbA at 1656.716 kb on + strand, within pmbA at 1656.716 kb on + strand, within pmbA at 1656.716 kb on + strand, within pmbA at 1656.724 kb on - strand, within pmbA at 1656.724 kb on - strand, within pmbA at 1656.724 kb on - strand, within pmbA at 1656.724 kb on - strand, within pmbA at 1656.762 kb on + strand, within pmbA at 1656.762 kb on + strand, within pmbA at 1656.787 kb on + strand, within pmbA at 1656.795 kb on - strand, within pmbA at 1656.795 kb on - strand, within pmbA at 1656.802 kb on + strand, within pmbA at 1656.857 kb on - strand, within pmbA at 1656.857 kb on - strand, within pmbA at 1656.862 kb on - strand, within pmbA at 1656.874 kb on + strand, within pmbA at 1656.877 kb on - strand, within pmbA at 1656.924 kb on - strand, within pmbA at 1657.025 kb on + strand, within pmbA at 1657.077 kb on - strand, within pmbA at 1657.094 kb on - strand, within pmbA at 1657.121 kb on + strand, within pmbA at 1657.127 kb on - strand, within pmbA at 1657.139 kb on - strand, within pmbA at 1657.164 kb on + strand at 1657.174 kb on + strand at 1657.202 kb on - strand at 1657.228 kb on + strand at 1657.277 kb on + strand at 1658.159 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.00390625 mg/ml remove 1,655,003 + Synpcc7942_1588 0.68 -0.4 1,655,003 + Synpcc7942_1588 0.68 -1.4 1,655,003 - Synpcc7942_1588 0.68 +0.9 1,655,006 - Synpcc7942_1588 0.68 -0.5 1,655,011 - Synpcc7942_1588 0.68 +1.4 1,655,069 + Synpcc7942_1588 0.70 -2.0 1,655,075 - Synpcc7942_1588 0.71 -2.6 1,655,075 - Synpcc7942_1588 0.71 +0.2 1,655,077 - Synpcc7942_1588 0.71 -0.6 1,655,077 - Synpcc7942_1588 0.71 -2.6 1,655,079 + Synpcc7942_1588 0.71 +2.9 1,655,133 - Synpcc7942_1588 0.73 +0.0 1,655,143 - Synpcc7942_1588 0.73 -0.1 1,655,143 - Synpcc7942_1588 0.73 +2.4 1,655,150 - Synpcc7942_1588 0.73 +0.9 1,655,150 - Synpcc7942_1588 0.73 +2.5 1,655,159 + Synpcc7942_1588 0.74 -0.1 1,655,167 - Synpcc7942_1588 0.74 -1.1 1,655,167 - Synpcc7942_1588 0.74 -0.1 1,655,177 - Synpcc7942_1588 0.74 +1.5 1,655,250 + Synpcc7942_1588 0.77 +0.9 1,655,250 + Synpcc7942_1588 0.77 +0.3 1,655,257 + Synpcc7942_1588 0.78 +1.6 1,655,258 - Synpcc7942_1588 0.78 -0.6 1,655,280 - Synpcc7942_1588 0.78 +0.4 1,655,286 + Synpcc7942_1588 0.79 +0.9 1,655,288 - Synpcc7942_1588 0.79 +1.2 1,655,296 + Synpcc7942_1588 0.79 +0.6 1,655,296 + Synpcc7942_1588 0.79 -0.6 1,655,301 - Synpcc7942_1588 0.79 +2.3 1,655,304 - Synpcc7942_1588 0.79 +1.5 1,655,321 + Synpcc7942_1588 0.80 -2.1 1,655,339 - Synpcc7942_1588 0.81 +1.5 1,655,339 - Synpcc7942_1588 0.81 -0.1 1,655,339 - Synpcc7942_1588 0.81 +2.4 1,655,390 - Synpcc7942_1588 0.83 -1.6 1,655,418 + Synpcc7942_1588 0.84 +3.8 1,655,426 - -0.1 1,655,427 + Synpcc7942_1588 0.84 -0.2 1,655,459 + Synpcc7942_1588 0.85 -1.6 1,655,467 - Synpcc7942_1588 0.86 -3.1 1,655,469 - Synpcc7942_1588 0.86 -0.1 1,655,486 + Synpcc7942_1588 0.86 +1.3 1,655,487 + Synpcc7942_1588 0.87 -0.6 1,655,491 + Synpcc7942_1588 0.87 -1.6 1,655,494 + Synpcc7942_1588 0.87 -0.8 1,655,494 - Synpcc7942_1588 0.87 +4.4 1,655,494 - Synpcc7942_1588 0.87 +3.0 1,655,494 - Synpcc7942_1588 0.87 +1.5 1,655,494 - Synpcc7942_1588 0.87 +3.6 1,655,540 + Synpcc7942_1588 0.89 -1.6 1,655,541 + Synpcc7942_1588 0.89 +1.2 1,655,541 + Synpcc7942_1588 0.89 +0.9 1,655,541 + Synpcc7942_1588 0.89 -2.6 1,655,548 - Synpcc7942_1588 0.89 -1.4 1,655,549 - Synpcc7942_1588 0.89 -1.1 1,655,571 + Synpcc7942_1588 0.90 -1.9 1,655,577 + -1.7 1,655,579 - -2.1 1,655,584 - -0.1 1,655,616 - +2.1 1,655,624 - +1.8 1,655,664 + -1.9 1,655,716 + -3.1 1,655,730 + -2.5 1,655,748 - +1.5 1,655,749 + +0.9 1,655,773 + +0.9 1,655,775 + -2.8 1,655,783 - +1.8 1,655,785 + -0.9 1,655,785 + +2.6 1,655,785 + +1.8 1,655,793 - -2.1 1,655,793 - -2.8 1,655,842 - +0.6 1,655,844 - -2.1 1,655,852 + +1.1 1,655,860 - -0.1 1,655,874 - +0.9 1,655,911 + -0.1 1,655,941 + -1.1 1,655,947 + -1.9 1,655,949 + +0.9 1,655,986 - -1.4 1,655,991 - +1.7 1,656,001 - -2.2 1,656,027 + -0.1 1,656,027 + -2.5 1,656,027 + -1.4 1,656,027 + -1.4 1,656,027 + -2.4 1,656,062 - +1.3 1,656,084 + -1.1 1,656,092 - -2.1 1,656,092 - -0.1 1,656,152 + pmbA Synpcc7942_1589 0.13 +0.9 1,656,152 + pmbA Synpcc7942_1589 0.13 -1.9 1,656,155 - pmbA Synpcc7942_1589 0.13 -2.4 1,656,157 + pmbA Synpcc7942_1589 0.14 -3.0 1,656,165 - pmbA Synpcc7942_1589 0.14 -1.6 1,656,165 - pmbA Synpcc7942_1589 0.14 -1.4 1,656,205 + pmbA Synpcc7942_1589 0.17 -1.6 1,656,205 + pmbA Synpcc7942_1589 0.17 -0.1 1,656,220 + pmbA Synpcc7942_1589 0.19 +0.9 1,656,242 + pmbA Synpcc7942_1589 0.20 -1.4 1,656,250 - pmbA Synpcc7942_1589 0.21 +0.9 1,656,260 - pmbA Synpcc7942_1589 0.22 -0.4 1,656,271 + pmbA Synpcc7942_1589 0.22 -1.4 1,656,271 + pmbA Synpcc7942_1589 0.22 -0.6 1,656,271 + pmbA Synpcc7942_1589 0.22 -2.2 1,656,271 + pmbA Synpcc7942_1589 0.22 -2.9 1,656,282 + pmbA Synpcc7942_1589 0.23 -1.1 1,656,282 + pmbA Synpcc7942_1589 0.23 -2.2 1,656,284 - pmbA Synpcc7942_1589 0.23 -1.6 1,656,290 - pmbA Synpcc7942_1589 0.24 -2.2 1,656,314 - pmbA Synpcc7942_1589 0.26 +0.5 1,656,319 - pmbA Synpcc7942_1589 0.26 -0.1 1,656,319 - pmbA Synpcc7942_1589 0.26 -2.6 1,656,377 + pmbA Synpcc7942_1589 0.31 -1.1 1,656,377 + pmbA Synpcc7942_1589 0.31 -0.6 1,656,452 + pmbA Synpcc7942_1589 0.37 -1.6 1,656,452 + pmbA Synpcc7942_1589 0.37 -3.1 1,656,459 + pmbA Synpcc7942_1589 0.37 -1.1 1,656,460 - pmbA Synpcc7942_1589 0.37 -3.3 1,656,466 + pmbA Synpcc7942_1589 0.38 +0.9 1,656,474 + pmbA Synpcc7942_1589 0.38 -3.4 1,656,534 + pmbA Synpcc7942_1589 0.43 -1.6 1,656,536 + pmbA Synpcc7942_1589 0.43 -0.1 1,656,550 - pmbA Synpcc7942_1589 0.44 -1.9 1,656,558 - pmbA Synpcc7942_1589 0.45 +2.4 1,656,558 - pmbA Synpcc7942_1589 0.45 -2.2 1,656,560 + pmbA Synpcc7942_1589 0.45 -0.1 1,656,560 + pmbA Synpcc7942_1589 0.45 +0.7 1,656,560 + pmbA Synpcc7942_1589 0.45 -3.0 1,656,568 - pmbA Synpcc7942_1589 0.46 +0.9 1,656,579 + pmbA Synpcc7942_1589 0.46 -1.6 1,656,587 + pmbA Synpcc7942_1589 0.47 -1.1 1,656,616 + pmbA Synpcc7942_1589 0.49 -3.1 1,656,619 - pmbA Synpcc7942_1589 0.49 -2.5 1,656,624 - pmbA Synpcc7942_1589 0.50 -0.1 1,656,629 + pmbA Synpcc7942_1589 0.50 -1.1 1,656,629 + pmbA Synpcc7942_1589 0.50 -3.4 1,656,629 + pmbA Synpcc7942_1589 0.50 +0.7 1,656,637 - pmbA Synpcc7942_1589 0.51 -2.1 1,656,642 + pmbA Synpcc7942_1589 0.51 -1.9 1,656,650 - pmbA Synpcc7942_1589 0.52 +4.8 1,656,660 - pmbA Synpcc7942_1589 0.53 -1.4 1,656,660 - pmbA Synpcc7942_1589 0.53 -0.1 1,656,660 - pmbA Synpcc7942_1589 0.53 +0.9 1,656,716 + pmbA Synpcc7942_1589 0.57 -0.6 1,656,716 + pmbA Synpcc7942_1589 0.57 -0.1 1,656,716 + pmbA Synpcc7942_1589 0.57 -1.6 1,656,716 + pmbA Synpcc7942_1589 0.57 -1.5 1,656,716 + pmbA Synpcc7942_1589 0.57 -0.6 1,656,724 - pmbA Synpcc7942_1589 0.58 +0.9 1,656,724 - pmbA Synpcc7942_1589 0.58 +0.9 1,656,724 - pmbA Synpcc7942_1589 0.58 -1.1 1,656,724 - pmbA Synpcc7942_1589 0.58 -0.5 1,656,762 + pmbA Synpcc7942_1589 0.61 -1.4 1,656,762 + pmbA Synpcc7942_1589 0.61 -3.6 1,656,787 + pmbA Synpcc7942_1589 0.62 -1.1 1,656,795 - pmbA Synpcc7942_1589 0.63 -2.5 1,656,795 - pmbA Synpcc7942_1589 0.63 -1.5 1,656,802 + pmbA Synpcc7942_1589 0.64 -1.1 1,656,857 - pmbA Synpcc7942_1589 0.68 +0.4 1,656,857 - pmbA Synpcc7942_1589 0.68 -2.8 1,656,862 - pmbA Synpcc7942_1589 0.68 -2.1 1,656,874 + pmbA Synpcc7942_1589 0.69 -2.8 1,656,877 - pmbA Synpcc7942_1589 0.69 +0.7 1,656,924 - pmbA Synpcc7942_1589 0.73 -2.8 1,657,025 + pmbA Synpcc7942_1589 0.81 -1.1 1,657,077 - pmbA Synpcc7942_1589 0.85 -2.1 1,657,094 - pmbA Synpcc7942_1589 0.86 -0.5 1,657,121 + pmbA Synpcc7942_1589 0.88 -2.8 1,657,127 - pmbA Synpcc7942_1589 0.89 -2.1 1,657,139 - pmbA Synpcc7942_1589 0.90 -2.6 1,657,164 + -1.4 1,657,174 + -1.6 1,657,202 - -1.9 1,657,228 + -2.1 1,657,277 + -1.4 1,658,159 + +2.5
Or see this region's nucleotide sequence