Experiment: Cephalothin 0.00390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt isiC and isiB are separated by 89 nucleotides isiB and isiA are separated by 184 nucleotides isiA and Synpcc7942_1543 are separated by 270 nucleotides Synpcc7942_1543 and Synpcc7942_1544 are separated by 24 nucleotides Synpcc7942_1544 and Synpcc7942_1545 are separated by 2 nucleotides
Synpcc7942_1540: isiC - hypothetical protein, at 1,597,856 to 1,598,566
isiC
Synpcc7942_1541: isiB - flavodoxin FldA, at 1,598,656 to 1,599,168
isiB
Synpcc7942_1542: isiA - iron-stress chlorophyll-binding protein, at 1,599,353 to 1,600,381
isiA
Synpcc7942_1543: Synpcc7942_1543 - putative ribonuclease II, at 1,600,652 to 1,600,777
_1543
Synpcc7942_1544: Synpcc7942_1544 - panthotenate metabolism flavoprotein, at 1,600,802 to 1,601,053
_1544
Synpcc7942_1545: Synpcc7942_1545 - plasmid stabilization protein StbB-like, at 1,601,056 to 1,601,511
_1545
Position (kb) 1599
1600
1601 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1598.358 kb on - strand, within isiC at 1598.408 kb on + strand, within isiC at 1598.418 kb on + strand, within isiC at 1598.446 kb on + strand, within isiC at 1598.513 kb on + strand at 1598.521 kb on - strand at 1598.535 kb on - strand at 1598.537 kb on + strand at 1598.545 kb on - strand at 1598.545 kb on - strand at 1598.555 kb on - strand at 1598.562 kb on + strand at 1598.608 kb on + strand at 1598.608 kb on + strand at 1598.616 kb on - strand at 1598.620 kb on + strand at 1598.620 kb on + strand at 1598.626 kb on - strand at 1598.654 kb on + strand at 1598.779 kb on - strand, within isiB at 1598.794 kb on + strand, within isiB at 1598.973 kb on - strand, within isiB at 1598.982 kb on - strand, within isiB at 1599.070 kb on - strand, within isiB at 1599.170 kb on + strand at 1599.215 kb on + strand at 1599.215 kb on + strand at 1599.215 kb on + strand at 1599.223 kb on - strand at 1599.223 kb on - strand at 1599.223 kb on - strand at 1599.359 kb on - strand at 1599.369 kb on - strand at 1599.369 kb on - strand at 1599.409 kb on + strand at 1599.451 kb on - strand at 1599.478 kb on - strand, within isiA at 1599.487 kb on + strand, within isiA at 1599.488 kb on - strand, within isiA at 1599.522 kb on + strand, within isiA at 1599.542 kb on - strand, within isiA at 1599.569 kb on + strand, within isiA at 1599.583 kb on + strand, within isiA at 1599.583 kb on + strand, within isiA at 1599.583 kb on + strand, within isiA at 1599.583 kb on + strand, within isiA at 1599.583 kb on + strand, within isiA at 1599.583 kb on + strand, within isiA at 1599.589 kb on - strand, within isiA at 1599.590 kb on + strand, within isiA at 1599.590 kb on + strand, within isiA at 1599.605 kb on + strand, within isiA at 1599.605 kb on + strand, within isiA at 1599.605 kb on + strand, within isiA at 1599.613 kb on - strand, within isiA at 1599.613 kb on - strand, within isiA at 1599.639 kb on - strand, within isiA at 1599.648 kb on - strand, within isiA at 1599.648 kb on - strand, within isiA at 1599.677 kb on + strand, within isiA at 1599.719 kb on - strand, within isiA at 1599.778 kb on - strand, within isiA at 1599.816 kb on + strand, within isiA at 1599.852 kb on + strand, within isiA at 1599.879 kb on + strand, within isiA at 1599.884 kb on - strand, within isiA at 1599.887 kb on - strand, within isiA at 1599.889 kb on - strand, within isiA at 1599.914 kb on - strand, within isiA at 1599.924 kb on + strand, within isiA at 1599.925 kb on + strand, within isiA at 1599.966 kb on - strand, within isiA at 1599.993 kb on + strand, within isiA at 1600.042 kb on + strand, within isiA at 1600.042 kb on + strand, within isiA at 1600.050 kb on + strand, within isiA at 1600.050 kb on - strand, within isiA at 1600.058 kb on - strand at 1600.060 kb on - strand, within isiA at 1600.078 kb on - strand, within isiA at 1600.088 kb on + strand, within isiA at 1600.093 kb on + strand, within isiA at 1600.093 kb on + strand, within isiA at 1600.093 kb on + strand, within isiA at 1600.123 kb on - strand, within isiA at 1600.128 kb on + strand, within isiA at 1600.136 kb on - strand, within isiA at 1600.148 kb on + strand, within isiA at 1600.153 kb on + strand, within isiA at 1600.156 kb on - strand, within isiA at 1600.159 kb on + strand, within isiA at 1600.159 kb on + strand, within isiA at 1600.193 kb on + strand, within isiA at 1600.194 kb on - strand, within isiA at 1600.194 kb on - strand, within isiA at 1600.195 kb on - strand, within isiA at 1600.203 kb on + strand, within isiA at 1600.203 kb on + strand, within isiA at 1600.203 kb on + strand, within isiA at 1600.203 kb on + strand, within isiA at 1600.203 kb on + strand, within isiA at 1600.203 kb on + strand, within isiA at 1600.203 kb on + strand, within isiA at 1600.203 kb on + strand, within isiA at 1600.208 kb on + strand, within isiA at 1600.211 kb on - strand, within isiA at 1600.211 kb on - strand, within isiA at 1600.211 kb on - strand, within isiA at 1600.211 kb on - strand, within isiA at 1600.211 kb on - strand, within isiA at 1600.211 kb on - strand, within isiA at 1600.211 kb on - strand, within isiA at 1600.211 kb on - strand, within isiA at 1600.213 kb on + strand, within isiA at 1600.213 kb on + strand, within isiA at 1600.221 kb on - strand, within isiA at 1600.221 kb on - strand, within isiA at 1600.244 kb on + strand, within isiA at 1600.273 kb on + strand, within isiA at 1600.278 kb on + strand, within isiA at 1600.281 kb on - strand at 1600.286 kb on - strand at 1600.308 kb on + strand at 1600.341 kb on - strand at 1600.356 kb on + strand at 1600.357 kb on + strand at 1600.357 kb on + strand at 1600.357 kb on + strand at 1600.365 kb on - strand at 1600.365 kb on - strand at 1600.367 kb on + strand at 1600.367 kb on + strand at 1600.367 kb on + strand at 1600.367 kb on + strand at 1600.368 kb on + strand at 1600.375 kb on - strand at 1600.376 kb on - strand at 1600.378 kb on + strand at 1600.378 kb on + strand at 1600.386 kb on - strand at 1600.386 kb on - strand at 1600.386 kb on - strand at 1600.519 kb on - strand at 1600.527 kb on - strand at 1600.571 kb on + strand at 1600.591 kb on + strand at 1600.591 kb on + strand at 1600.609 kb on + strand at 1600.613 kb on - strand at 1600.617 kb on + strand at 1600.627 kb on + strand at 1600.669 kb on - strand, within Synpcc7942_1543 at 1600.678 kb on + strand, within Synpcc7942_1543 at 1600.686 kb on + strand, within Synpcc7942_1543 at 1600.713 kb on - strand, within Synpcc7942_1543 at 1600.713 kb on - strand, within Synpcc7942_1543 at 1600.713 kb on - strand, within Synpcc7942_1543 at 1600.841 kb on - strand, within Synpcc7942_1544 at 1600.847 kb on + strand, within Synpcc7942_1544 at 1600.881 kb on + strand, within Synpcc7942_1544 at 1600.889 kb on - strand, within Synpcc7942_1544 at 1600.889 kb on - strand, within Synpcc7942_1544 at 1600.923 kb on + strand, within Synpcc7942_1544 at 1601.010 kb on + strand, within Synpcc7942_1544 at 1601.010 kb on + strand, within Synpcc7942_1544 at 1601.018 kb on - strand at 1601.099 kb on - strand at 1601.109 kb on - strand, within Synpcc7942_1545 at 1601.116 kb on + strand, within Synpcc7942_1545 at 1601.116 kb on + strand, within Synpcc7942_1545 at 1601.116 kb on + strand, within Synpcc7942_1545 at 1601.116 kb on + strand, within Synpcc7942_1545 at 1601.124 kb on - strand, within Synpcc7942_1545 at 1601.124 kb on - strand, within Synpcc7942_1545 at 1601.160 kb on - strand, within Synpcc7942_1545 at 1601.162 kb on + strand, within Synpcc7942_1545 at 1601.171 kb on + strand, within Synpcc7942_1545 at 1601.192 kb on + strand, within Synpcc7942_1545 at 1601.205 kb on + strand, within Synpcc7942_1545 at 1601.217 kb on + strand, within Synpcc7942_1545 at 1601.250 kb on - strand, within Synpcc7942_1545 at 1601.310 kb on - strand, within Synpcc7942_1545 at 1601.315 kb on - strand, within Synpcc7942_1545
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.00390625 mg/ml remove 1,598,358 - isiC Synpcc7942_1540 0.71 +1.0 1,598,408 + isiC Synpcc7942_1540 0.78 -2.6 1,598,418 + isiC Synpcc7942_1540 0.79 +1.4 1,598,446 + isiC Synpcc7942_1540 0.83 -1.8 1,598,513 + -0.2 1,598,521 - +4.5 1,598,535 - +2.2 1,598,537 + +1.9 1,598,545 - -0.0 1,598,545 - +0.6 1,598,555 - +2.4 1,598,562 + +1.5 1,598,608 + -1.6 1,598,608 + +2.1 1,598,616 - +2.3 1,598,620 + +0.8 1,598,620 + +0.5 1,598,626 - +0.4 1,598,654 + +2.3 1,598,779 - isiB Synpcc7942_1541 0.24 -0.6 1,598,794 + isiB Synpcc7942_1541 0.27 +2.6 1,598,973 - isiB Synpcc7942_1541 0.62 +1.6 1,598,982 - isiB Synpcc7942_1541 0.64 -1.9 1,599,070 - isiB Synpcc7942_1541 0.81 -0.4 1,599,170 + +3.8 1,599,215 + +1.4 1,599,215 + +1.2 1,599,215 + +1.7 1,599,223 - -0.3 1,599,223 - +0.8 1,599,223 - +3.9 1,599,359 - +2.1 1,599,369 - -0.4 1,599,369 - +1.8 1,599,409 + +2.1 1,599,451 - -1.1 1,599,478 - isiA Synpcc7942_1542 0.12 +1.0 1,599,487 + isiA Synpcc7942_1542 0.13 +3.0 1,599,488 - isiA Synpcc7942_1542 0.13 +1.8 1,599,522 + isiA Synpcc7942_1542 0.16 -1.0 1,599,542 - isiA Synpcc7942_1542 0.18 -1.4 1,599,569 + isiA Synpcc7942_1542 0.21 +2.8 1,599,583 + isiA Synpcc7942_1542 0.22 -1.6 1,599,583 + isiA Synpcc7942_1542 0.22 -1.8 1,599,583 + isiA Synpcc7942_1542 0.22 -0.6 1,599,583 + isiA Synpcc7942_1542 0.22 -1.6 1,599,583 + isiA Synpcc7942_1542 0.22 -0.4 1,599,583 + isiA Synpcc7942_1542 0.22 +2.9 1,599,589 - isiA Synpcc7942_1542 0.23 +2.4 1,599,590 + isiA Synpcc7942_1542 0.23 +0.3 1,599,590 + isiA Synpcc7942_1542 0.23 +2.5 1,599,605 + isiA Synpcc7942_1542 0.24 +2.9 1,599,605 + isiA Synpcc7942_1542 0.24 +1.0 1,599,605 + isiA Synpcc7942_1542 0.24 +4.0 1,599,613 - isiA Synpcc7942_1542 0.25 +1.3 1,599,613 - isiA Synpcc7942_1542 0.25 +2.3 1,599,639 - isiA Synpcc7942_1542 0.28 +2.1 1,599,648 - isiA Synpcc7942_1542 0.29 +1.0 1,599,648 - isiA Synpcc7942_1542 0.29 +1.2 1,599,677 + isiA Synpcc7942_1542 0.31 +2.8 1,599,719 - isiA Synpcc7942_1542 0.36 +2.6 1,599,778 - isiA Synpcc7942_1542 0.41 +3.8 1,599,816 + isiA Synpcc7942_1542 0.45 +0.4 1,599,852 + isiA Synpcc7942_1542 0.48 -0.8 1,599,879 + isiA Synpcc7942_1542 0.51 -1.2 1,599,884 - isiA Synpcc7942_1542 0.52 +1.7 1,599,887 - isiA Synpcc7942_1542 0.52 +0.5 1,599,889 - isiA Synpcc7942_1542 0.52 -0.3 1,599,914 - isiA Synpcc7942_1542 0.55 +2.8 1,599,924 + isiA Synpcc7942_1542 0.55 -1.4 1,599,925 + isiA Synpcc7942_1542 0.56 -0.0 1,599,966 - isiA Synpcc7942_1542 0.60 +1.4 1,599,993 + isiA Synpcc7942_1542 0.62 -0.0 1,600,042 + isiA Synpcc7942_1542 0.67 +2.4 1,600,042 + isiA Synpcc7942_1542 0.67 +1.8 1,600,050 + isiA Synpcc7942_1542 0.68 +2.3 1,600,050 - isiA Synpcc7942_1542 0.68 +3.7 1,600,058 - -0.0 1,600,060 - isiA Synpcc7942_1542 0.69 +2.1 1,600,078 - isiA Synpcc7942_1542 0.70 -2.4 1,600,088 + isiA Synpcc7942_1542 0.71 -1.0 1,600,093 + isiA Synpcc7942_1542 0.72 +0.7 1,600,093 + isiA Synpcc7942_1542 0.72 +1.9 1,600,093 + isiA Synpcc7942_1542 0.72 -1.8 1,600,123 - isiA Synpcc7942_1542 0.75 -2.9 1,600,128 + isiA Synpcc7942_1542 0.75 +1.5 1,600,136 - isiA Synpcc7942_1542 0.76 +2.4 1,600,148 + isiA Synpcc7942_1542 0.77 +2.2 1,600,153 + isiA Synpcc7942_1542 0.78 +2.0 1,600,156 - isiA Synpcc7942_1542 0.78 +1.0 1,600,159 + isiA Synpcc7942_1542 0.78 -0.0 1,600,159 + isiA Synpcc7942_1542 0.78 +2.5 1,600,193 + isiA Synpcc7942_1542 0.82 -1.6 1,600,194 - isiA Synpcc7942_1542 0.82 +2.1 1,600,194 - isiA Synpcc7942_1542 0.82 -0.8 1,600,195 - isiA Synpcc7942_1542 0.82 +1.4 1,600,203 + isiA Synpcc7942_1542 0.83 +3.3 1,600,203 + isiA Synpcc7942_1542 0.83 +1.8 1,600,203 + isiA Synpcc7942_1542 0.83 +3.4 1,600,203 + isiA Synpcc7942_1542 0.83 +2.1 1,600,203 + isiA Synpcc7942_1542 0.83 +2.0 1,600,203 + isiA Synpcc7942_1542 0.83 +1.0 1,600,203 + isiA Synpcc7942_1542 0.83 +2.7 1,600,203 + isiA Synpcc7942_1542 0.83 +2.1 1,600,208 + isiA Synpcc7942_1542 0.83 -1.6 1,600,211 - isiA Synpcc7942_1542 0.83 -0.8 1,600,211 - isiA Synpcc7942_1542 0.83 -0.2 1,600,211 - isiA Synpcc7942_1542 0.83 +1.4 1,600,211 - isiA Synpcc7942_1542 0.83 -0.4 1,600,211 - isiA Synpcc7942_1542 0.83 +1.6 1,600,211 - isiA Synpcc7942_1542 0.83 +0.3 1,600,211 - isiA Synpcc7942_1542 0.83 +3.5 1,600,211 - isiA Synpcc7942_1542 0.83 -1.6 1,600,213 + isiA Synpcc7942_1542 0.84 +2.0 1,600,213 + isiA Synpcc7942_1542 0.84 -0.0 1,600,221 - isiA Synpcc7942_1542 0.84 +2.4 1,600,221 - isiA Synpcc7942_1542 0.84 -0.0 1,600,244 + isiA Synpcc7942_1542 0.87 -1.4 1,600,273 + isiA Synpcc7942_1542 0.89 -0.0 1,600,278 + isiA Synpcc7942_1542 0.90 -2.4 1,600,281 - -0.0 1,600,286 - -2.2 1,600,308 + +1.0 1,600,341 - +0.9 1,600,356 + +1.1 1,600,357 + +1.2 1,600,357 + +3.3 1,600,357 + +1.2 1,600,365 - -0.5 1,600,365 - +1.0 1,600,367 + +3.5 1,600,367 + +2.5 1,600,367 + +0.4 1,600,367 + -1.0 1,600,368 + +1.6 1,600,375 - -1.0 1,600,376 - -0.6 1,600,378 + +0.6 1,600,378 + +0.5 1,600,386 - -0.6 1,600,386 - +0.8 1,600,386 - +2.4 1,600,519 - +3.8 1,600,527 - +2.0 1,600,571 + -1.0 1,600,591 + +1.0 1,600,591 + -1.0 1,600,609 + +2.0 1,600,613 - +1.0 1,600,617 + -0.0 1,600,627 + -2.8 1,600,669 - Synpcc7942_1543 0.13 +0.6 1,600,678 + Synpcc7942_1543 0.21 +0.5 1,600,686 + Synpcc7942_1543 0.27 -0.0 1,600,713 - Synpcc7942_1543 0.48 +3.3 1,600,713 - Synpcc7942_1543 0.48 -1.8 1,600,713 - Synpcc7942_1543 0.48 +1.8 1,600,841 - Synpcc7942_1544 0.15 -1.0 1,600,847 + Synpcc7942_1544 0.18 -0.0 1,600,881 + Synpcc7942_1544 0.31 -2.0 1,600,889 - Synpcc7942_1544 0.35 +1.2 1,600,889 - Synpcc7942_1544 0.35 +2.2 1,600,923 + Synpcc7942_1544 0.48 +1.1 1,601,010 + Synpcc7942_1544 0.83 -0.6 1,601,010 + Synpcc7942_1544 0.83 +4.2 1,601,018 - +1.0 1,601,099 - +1.9 1,601,109 - Synpcc7942_1545 0.12 +1.8 1,601,116 + Synpcc7942_1545 0.13 -0.6 1,601,116 + Synpcc7942_1545 0.13 +0.4 1,601,116 + Synpcc7942_1545 0.13 +1.8 1,601,116 + Synpcc7942_1545 0.13 +0.6 1,601,124 - Synpcc7942_1545 0.15 -1.0 1,601,124 - Synpcc7942_1545 0.15 -0.6 1,601,160 - Synpcc7942_1545 0.23 +0.4 1,601,162 + Synpcc7942_1545 0.23 -1.8 1,601,171 + Synpcc7942_1545 0.25 -2.2 1,601,192 + Synpcc7942_1545 0.30 -1.6 1,601,205 + Synpcc7942_1545 0.33 +1.0 1,601,217 + Synpcc7942_1545 0.35 -0.0 1,601,250 - Synpcc7942_1545 0.43 +3.5 1,601,310 - Synpcc7942_1545 0.56 -0.6 1,601,315 - Synpcc7942_1545 0.57 -2.0
Or see this region's nucleotide sequence