Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0748

Experiment: Cephalothin 0.00390625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0747 and Synpcc7942_0748 overlap by 4 nucleotidesSynpcc7942_0748 and Synpcc7942_0749 are separated by 3 nucleotidesSynpcc7942_0749 and Synpcc7942_0750 are separated by 123 nucleotides Synpcc7942_0747: Synpcc7942_0747 - hypothetical protein, at 741,396 to 742,820 _0747 Synpcc7942_0748: Synpcc7942_0748 - Phage major tail tube protein, at 742,817 to 743,320 _0748 Synpcc7942_0749: Synpcc7942_0749 - hypothetical protein, at 743,324 to 743,614 _0749 Synpcc7942_0750: Synpcc7942_0750 - Phage tail tape measure protein TP901, core region, at 743,738 to 746,590 _0750 Position (kb) 742 743 744Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5at 741.851 kb on - strand, within Synpcc7942_0747at 741.857 kb on + strand, within Synpcc7942_0747at 741.893 kb on + strand, within Synpcc7942_0747at 741.906 kb on - strand, within Synpcc7942_0747at 741.906 kb on - strand, within Synpcc7942_0747at 741.921 kb on + strand, within Synpcc7942_0747at 741.921 kb on + strand, within Synpcc7942_0747at 741.921 kb on + strand, within Synpcc7942_0747at 741.921 kb on + strand, within Synpcc7942_0747at 741.926 kb on + strand, within Synpcc7942_0747at 741.934 kb on - strand, within Synpcc7942_0747at 741.951 kb on + strand, within Synpcc7942_0747at 741.982 kb on - strand, within Synpcc7942_0747at 742.002 kb on + strand, within Synpcc7942_0747at 742.020 kb on + strand, within Synpcc7942_0747at 742.028 kb on - strand, within Synpcc7942_0747at 742.028 kb on - strand, within Synpcc7942_0747at 742.054 kb on + strand, within Synpcc7942_0747at 742.061 kb on + strand, within Synpcc7942_0747at 742.062 kb on - strand, within Synpcc7942_0747at 742.064 kb on - strand, within Synpcc7942_0747at 742.064 kb on - strand, within Synpcc7942_0747at 742.071 kb on + strand, within Synpcc7942_0747at 742.071 kb on + strand, within Synpcc7942_0747at 742.095 kb on + strand, within Synpcc7942_0747at 742.100 kb on + strand, within Synpcc7942_0747at 742.103 kb on - strand, within Synpcc7942_0747at 742.131 kb on + strand, within Synpcc7942_0747at 742.160 kb on - strand, within Synpcc7942_0747at 742.160 kb on - strand, within Synpcc7942_0747at 742.207 kb on - strand, within Synpcc7942_0747at 742.213 kb on + strand, within Synpcc7942_0747at 742.213 kb on + strand, within Synpcc7942_0747at 742.213 kb on + strand, within Synpcc7942_0747at 742.213 kb on + strand, within Synpcc7942_0747at 742.221 kb on - strand, within Synpcc7942_0747at 742.221 kb on - strand, within Synpcc7942_0747at 742.221 kb on - strand, within Synpcc7942_0747at 742.221 kb on - strandat 742.221 kb on - strand, within Synpcc7942_0747at 742.226 kb on - strand, within Synpcc7942_0747at 742.234 kb on - strand, within Synpcc7942_0747at 742.297 kb on + strand, within Synpcc7942_0747at 742.319 kb on - strandat 742.350 kb on + strand, within Synpcc7942_0747at 742.377 kb on + strand, within Synpcc7942_0747at 742.378 kb on - strand, within Synpcc7942_0747at 742.438 kb on + strand, within Synpcc7942_0747at 742.438 kb on + strand, within Synpcc7942_0747at 742.453 kb on - strand, within Synpcc7942_0747at 742.478 kb on + strandat 742.486 kb on + strand, within Synpcc7942_0747at 742.509 kb on + strand, within Synpcc7942_0747at 742.544 kb on + strand, within Synpcc7942_0747at 742.544 kb on + strand, within Synpcc7942_0747at 742.544 kb on + strand, within Synpcc7942_0747at 742.544 kb on + strand, within Synpcc7942_0747at 742.544 kb on + strand, within Synpcc7942_0747at 742.544 kb on + strand, within Synpcc7942_0747at 742.547 kb on + strandat 742.547 kb on - strand, within Synpcc7942_0747at 742.552 kb on - strand, within Synpcc7942_0747at 742.552 kb on - strand, within Synpcc7942_0747at 742.552 kb on - strand, within Synpcc7942_0747at 742.552 kb on - strand, within Synpcc7942_0747at 742.554 kb on + strand, within Synpcc7942_0747at 742.554 kb on - strand, within Synpcc7942_0747at 742.610 kb on - strand, within Synpcc7942_0747at 742.610 kb on - strand, within Synpcc7942_0747at 742.625 kb on - strand, within Synpcc7942_0747at 742.655 kb on + strand, within Synpcc7942_0747at 742.663 kb on - strand, within Synpcc7942_0747at 742.663 kb on - strand, within Synpcc7942_0747at 742.671 kb on + strand, within Synpcc7942_0747at 742.694 kb on + strandat 742.698 kb on - strandat 742.698 kb on - strandat 742.699 kb on - strandat 742.728 kb on + strandat 742.733 kb on + strandat 742.736 kb on - strandat 742.736 kb on - strandat 742.741 kb on - strandat 742.772 kb on + strandat 742.772 kb on + strandat 742.773 kb on + strandat 742.778 kb on - strandat 742.780 kb on - strandat 742.780 kb on - strandat 742.781 kb on - strandat 742.788 kb on + strandat 742.794 kb on - strandat 742.796 kb on + strandat 742.853 kb on + strandat 742.886 kb on - strand, within Synpcc7942_0748at 742.888 kb on + strand, within Synpcc7942_0748at 742.888 kb on + strand, within Synpcc7942_0748at 742.895 kb on - strand, within Synpcc7942_0748at 742.895 kb on - strand, within Synpcc7942_0748at 742.895 kb on - strand, within Synpcc7942_0748at 742.895 kb on - strand, within Synpcc7942_0748at 742.897 kb on + strand, within Synpcc7942_0748at 742.897 kb on + strand, within Synpcc7942_0748at 742.915 kb on + strand, within Synpcc7942_0748at 742.918 kb on - strand, within Synpcc7942_0748at 742.922 kb on + strand, within Synpcc7942_0748at 742.959 kb on - strand, within Synpcc7942_0748at 742.970 kb on - strand, within Synpcc7942_0748at 742.970 kb on - strand, within Synpcc7942_0748at 742.970 kb on - strand, within Synpcc7942_0748at 742.975 kb on - strandat 742.981 kb on - strand, within Synpcc7942_0748at 742.989 kb on + strand, within Synpcc7942_0748at 742.989 kb on + strand, within Synpcc7942_0748at 742.997 kb on - strand, within Synpcc7942_0748at 742.997 kb on - strand, within Synpcc7942_0748at 743.007 kb on - strand, within Synpcc7942_0748at 743.010 kb on + strand, within Synpcc7942_0748at 743.018 kb on - strand, within Synpcc7942_0748at 743.026 kb on + strand, within Synpcc7942_0748at 743.026 kb on + strand, within Synpcc7942_0748at 743.028 kb on - strandat 743.034 kb on - strand, within Synpcc7942_0748at 743.059 kb on + strand, within Synpcc7942_0748at 743.075 kb on + strand, within Synpcc7942_0748at 743.104 kb on + strand, within Synpcc7942_0748at 743.131 kb on + strand, within Synpcc7942_0748at 743.131 kb on + strand, within Synpcc7942_0748at 743.135 kb on - strand, within Synpcc7942_0748at 743.150 kb on + strand, within Synpcc7942_0748at 743.183 kb on + strand, within Synpcc7942_0748at 743.183 kb on - strand, within Synpcc7942_0748at 743.183 kb on - strand, within Synpcc7942_0748at 743.185 kb on + strand, within Synpcc7942_0748at 743.193 kb on - strand, within Synpcc7942_0748at 743.193 kb on - strand, within Synpcc7942_0748at 743.193 kb on - strand, within Synpcc7942_0748at 743.226 kb on + strand, within Synpcc7942_0748at 743.226 kb on + strandat 743.226 kb on + strand, within Synpcc7942_0748at 743.226 kb on + strand, within Synpcc7942_0748at 743.234 kb on - strand, within Synpcc7942_0748at 743.234 kb on - strand, within Synpcc7942_0748at 743.280 kb on - strandat 743.285 kb on - strandat 743.285 kb on - strandat 743.290 kb on - strandat 743.295 kb on - strandat 743.295 kb on - strandat 743.295 kb on - strandat 743.295 kb on - strandat 743.295 kb on - strandat 743.327 kb on + strandat 743.449 kb on + strand, within Synpcc7942_0749at 743.449 kb on + strand, within Synpcc7942_0749at 743.457 kb on - strand, within Synpcc7942_0749at 743.457 kb on - strand, within Synpcc7942_0749at 743.457 kb on - strand, within Synpcc7942_0749at 743.463 kb on + strandat 743.471 kb on - strand, within Synpcc7942_0749at 743.471 kb on - strand, within Synpcc7942_0749at 743.471 kb on - strand, within Synpcc7942_0749at 743.471 kb on - strand, within Synpcc7942_0749at 743.471 kb on - strand, within Synpcc7942_0749at 743.495 kb on - strand, within Synpcc7942_0749at 743.501 kb on + strand, within Synpcc7942_0749at 743.502 kb on + strand, within Synpcc7942_0749at 743.516 kb on - strand, within Synpcc7942_0749at 743.517 kb on + strand, within Synpcc7942_0749at 743.535 kb on - strand, within Synpcc7942_0749at 743.563 kb on + strand, within Synpcc7942_0749at 743.563 kb on + strand, within Synpcc7942_0749at 743.563 kb on + strand, within Synpcc7942_0749at 743.563 kb on + strand, within Synpcc7942_0749at 743.563 kb on + strand, within Synpcc7942_0749at 743.571 kb on - strand, within Synpcc7942_0749at 743.571 kb on - strand, within Synpcc7942_0749at 743.571 kb on - strand, within Synpcc7942_0749at 743.596 kb on - strandat 743.622 kb on + strandat 743.733 kb on - strandat 743.769 kb on + strandat 743.781 kb on + strandat 743.807 kb on - strandat 743.816 kb on + strandat 743.816 kb on + strandat 743.822 kb on + strandat 743.824 kb on - strandat 743.824 kb on - strandat 743.827 kb on + strandat 743.827 kb on + strandat 743.827 kb on + strandat 743.835 kb on - strandat 743.835 kb on - strandat 743.835 kb on - strandat 743.835 kb on - strandat 743.835 kb on - strandat 743.839 kb on + strandat 743.839 kb on + strandat 743.847 kb on - strandat 743.848 kb on + strandat 743.848 kb on + strandat 743.856 kb on - strandat 743.866 kb on - strandat 743.868 kb on - strandat 743.927 kb on + strandat 743.927 kb on + strandat 743.927 kb on + strandat 743.927 kb on + strandat 743.935 kb on - strandat 743.997 kb on + strandat 743.997 kb on + strandat 744.013 kb on + strandat 744.014 kb on + strandat 744.019 kb on + strandat 744.021 kb on - strandat 744.108 kb on - strand, within Synpcc7942_0750at 744.110 kb on + strand, within Synpcc7942_0750at 744.110 kb on + strand, within Synpcc7942_0750at 744.118 kb on - strand, within Synpcc7942_0750at 744.125 kb on + strand, within Synpcc7942_0750at 744.142 kb on - strand, within Synpcc7942_0750at 744.145 kb on + strand, within Synpcc7942_0750at 744.152 kb on - strand, within Synpcc7942_0750at 744.153 kb on + strand, within Synpcc7942_0750at 744.153 kb on - strand, within Synpcc7942_0750at 744.180 kb on + strand, within Synpcc7942_0750at 744.188 kb on - strand, within Synpcc7942_0750at 744.210 kb on + strand, within Synpcc7942_0750at 744.234 kb on + strand, within Synpcc7942_0750at 744.264 kb on - strand, within Synpcc7942_0750at 744.282 kb on - strand, within Synpcc7942_0750at 744.282 kb on - strand, within Synpcc7942_0750at 744.288 kb on + strand, within Synpcc7942_0750at 744.310 kb on + strand, within Synpcc7942_0750at 744.312 kb on + strand, within Synpcc7942_0750at 744.317 kb on + strand, within Synpcc7942_0750

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.00390625 mg/ml
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741,851 - Synpcc7942_0747 0.32 +1.7
741,857 + Synpcc7942_0747 0.32 -0.2
741,893 + Synpcc7942_0747 0.35 -2.3
741,906 - Synpcc7942_0747 0.36 +0.7
741,906 - Synpcc7942_0747 0.36 +0.8
741,921 + Synpcc7942_0747 0.37 -0.5
741,921 + Synpcc7942_0747 0.37 +2.1
741,921 + Synpcc7942_0747 0.37 -0.2
741,921 + Synpcc7942_0747 0.37 +0.5
741,926 + Synpcc7942_0747 0.37 -1.5
741,934 - Synpcc7942_0747 0.38 -0.2
741,951 + Synpcc7942_0747 0.39 -0.2
741,982 - Synpcc7942_0747 0.41 -0.8
742,002 + Synpcc7942_0747 0.43 -1.5
742,020 + Synpcc7942_0747 0.44 -1.8
742,028 - Synpcc7942_0747 0.44 -0.5
742,028 - Synpcc7942_0747 0.44 +4.6
742,054 + Synpcc7942_0747 0.46 +3.0
742,061 + Synpcc7942_0747 0.47 -1.5
742,062 - Synpcc7942_0747 0.47 -0.9
742,064 - Synpcc7942_0747 0.47 +2.3
742,064 - Synpcc7942_0747 0.47 -0.2
742,071 + Synpcc7942_0747 0.47 -1.8
742,071 + Synpcc7942_0747 0.47 +1.2
742,095 + Synpcc7942_0747 0.49 +0.8
742,100 + Synpcc7942_0747 0.49 -1.2
742,103 - Synpcc7942_0747 0.50 +0.8
742,131 + Synpcc7942_0747 0.52 +0.8
742,160 - Synpcc7942_0747 0.54 -2.6
742,160 - Synpcc7942_0747 0.54 -0.3
742,207 - Synpcc7942_0747 0.57 +1.5
742,213 + Synpcc7942_0747 0.57 -5.3
742,213 + Synpcc7942_0747 0.57 -1.8
742,213 + Synpcc7942_0747 0.57 +3.3
742,213 + Synpcc7942_0747 0.57 +1.7
742,221 - Synpcc7942_0747 0.58 +0.9
742,221 - Synpcc7942_0747 0.58 -0.2
742,221 - Synpcc7942_0747 0.58 +0.8
742,221 - +0.8
742,221 - Synpcc7942_0747 0.58 -3.0
742,226 - Synpcc7942_0747 0.58 -2.9
742,234 - Synpcc7942_0747 0.59 +1.4
742,297 + Synpcc7942_0747 0.63 -2.2
742,319 - +1.8
742,350 + Synpcc7942_0747 0.67 +0.8
742,377 + Synpcc7942_0747 0.69 -2.0
742,378 - Synpcc7942_0747 0.69 -2.3
742,438 + Synpcc7942_0747 0.73 +0.3
742,438 + Synpcc7942_0747 0.73 -0.8
742,453 - Synpcc7942_0747 0.74 +2.9
742,478 + +5.0
742,486 + Synpcc7942_0747 0.76 -0.8
742,509 + Synpcc7942_0747 0.78 +1.1
742,544 + Synpcc7942_0747 0.81 -2.0
742,544 + Synpcc7942_0747 0.81 -2.0
742,544 + Synpcc7942_0747 0.81 +1.2
742,544 + Synpcc7942_0747 0.81 +0.5
742,544 + Synpcc7942_0747 0.81 -3.2
742,544 + Synpcc7942_0747 0.81 +2.1
742,547 + +0.8
742,547 - Synpcc7942_0747 0.81 +1.0
742,552 - Synpcc7942_0747 0.81 -1.2
742,552 - Synpcc7942_0747 0.81 -0.2
742,552 - Synpcc7942_0747 0.81 +0.2
742,552 - Synpcc7942_0747 0.81 +1.8
742,554 + Synpcc7942_0747 0.81 -0.2
742,554 - Synpcc7942_0747 0.81 +0.8
742,610 - Synpcc7942_0747 0.85 -0.3
742,610 - Synpcc7942_0747 0.85 +2.7
742,625 - Synpcc7942_0747 0.86 +0.6
742,655 + Synpcc7942_0747 0.88 -2.0
742,663 - Synpcc7942_0747 0.89 -2.0
742,663 - Synpcc7942_0747 0.89 -2.9
742,671 + Synpcc7942_0747 0.89 +1.0
742,694 + +0.6
742,698 - +0.8
742,698 - +0.8
742,699 - +1.5
742,728 + -0.8
742,733 + -0.8
742,736 - +1.6
742,736 - +0.4
742,741 - -1.2
742,772 + +0.3
742,772 + -2.0
742,773 + -1.5
742,778 - -0.1
742,780 - -1.5
742,780 - -1.8
742,781 - +0.8
742,788 + +0.8
742,794 - +2.5
742,796 + -0.2
742,853 + -1.8
742,886 - Synpcc7942_0748 0.14 -0.8
742,888 + Synpcc7942_0748 0.14 +0.8
742,888 + Synpcc7942_0748 0.14 -0.8
742,895 - Synpcc7942_0748 0.15 +1.6
742,895 - Synpcc7942_0748 0.15 +1.0
742,895 - Synpcc7942_0748 0.15 -2.0
742,895 - Synpcc7942_0748 0.15 -1.7
742,897 + Synpcc7942_0748 0.16 -2.2
742,897 + Synpcc7942_0748 0.16 -0.8
742,915 + Synpcc7942_0748 0.19 -0.8
742,918 - Synpcc7942_0748 0.20 +0.8
742,922 + Synpcc7942_0748 0.21 +2.3
742,959 - Synpcc7942_0748 0.28 +0.6
742,970 - Synpcc7942_0748 0.30 +1.4
742,970 - Synpcc7942_0748 0.30 -1.2
742,970 - Synpcc7942_0748 0.30 -1.8
742,975 - +0.8
742,981 - Synpcc7942_0748 0.33 -1.2
742,989 + Synpcc7942_0748 0.34 +1.8
742,989 + Synpcc7942_0748 0.34 +0.1
742,997 - Synpcc7942_0748 0.36 -1.8
742,997 - Synpcc7942_0748 0.36 +2.2
743,007 - Synpcc7942_0748 0.38 -0.8
743,010 + Synpcc7942_0748 0.38 -2.2
743,018 - Synpcc7942_0748 0.40 +1.6
743,026 + Synpcc7942_0748 0.41 +2.6
743,026 + Synpcc7942_0748 0.41 -1.0
743,028 - +1.8
743,034 - Synpcc7942_0748 0.43 -1.5
743,059 + Synpcc7942_0748 0.48 -1.8
743,075 + Synpcc7942_0748 0.51 -1.5
743,104 + Synpcc7942_0748 0.57 -0.2
743,131 + Synpcc7942_0748 0.62 -0.3
743,131 + Synpcc7942_0748 0.62 -0.8
743,135 - Synpcc7942_0748 0.63 +0.9
743,150 + Synpcc7942_0748 0.66 -1.2
743,183 + Synpcc7942_0748 0.73 -0.3
743,183 - Synpcc7942_0748 0.73 -0.8
743,183 - Synpcc7942_0748 0.73 +0.1
743,185 + Synpcc7942_0748 0.73 +0.7
743,193 - Synpcc7942_0748 0.75 +0.1
743,193 - Synpcc7942_0748 0.75 -1.0
743,193 - Synpcc7942_0748 0.75 -0.2
743,226 + Synpcc7942_0748 0.81 +1.6
743,226 + -1.2
743,226 + Synpcc7942_0748 0.81 -1.2
743,226 + Synpcc7942_0748 0.81 -0.2
743,234 - Synpcc7942_0748 0.83 +3.2
743,234 - Synpcc7942_0748 0.83 +0.6
743,280 - -1.2
743,285 - -4.0
743,285 - +1.6
743,290 - -0.0
743,295 - +2.8
743,295 - -0.8
743,295 - -0.8
743,295 - +0.2
743,295 - +0.5
743,327 + -1.2
743,449 + Synpcc7942_0749 0.43 +0.5
743,449 + Synpcc7942_0749 0.43 -0.5
743,457 - Synpcc7942_0749 0.46 +0.7
743,457 - Synpcc7942_0749 0.46 -1.8
743,457 - Synpcc7942_0749 0.46 -1.2
743,463 + -1.2
743,471 - Synpcc7942_0749 0.51 -0.8
743,471 - Synpcc7942_0749 0.51 -1.2
743,471 - Synpcc7942_0749 0.51 +2.7
743,471 - Synpcc7942_0749 0.51 -3.3
743,471 - Synpcc7942_0749 0.51 +1.5
743,495 - Synpcc7942_0749 0.59 -0.5
743,501 + Synpcc7942_0749 0.61 +2.7
743,502 + Synpcc7942_0749 0.61 -1.8
743,516 - Synpcc7942_0749 0.66 +2.2
743,517 + Synpcc7942_0749 0.66 +1.9
743,535 - Synpcc7942_0749 0.73 -1.3
743,563 + Synpcc7942_0749 0.82 -0.2
743,563 + Synpcc7942_0749 0.82 -2.0
743,563 + Synpcc7942_0749 0.82 -0.2
743,563 + Synpcc7942_0749 0.82 -0.1
743,563 + Synpcc7942_0749 0.82 +1.8
743,571 - Synpcc7942_0749 0.85 -0.2
743,571 - Synpcc7942_0749 0.85 -0.0
743,571 - Synpcc7942_0749 0.85 +3.8
743,596 - +1.7
743,622 + +1.3
743,733 - +2.4
743,769 + -1.5
743,781 + +0.8
743,807 - +1.6
743,816 + -0.8
743,816 + +0.3
743,822 + +4.3
743,824 - +1.2
743,824 - -2.2
743,827 + -0.2
743,827 + +1.3
743,827 + -0.8
743,835 - +2.2
743,835 - +2.1
743,835 - -5.1
743,835 - -1.2
743,835 - +1.5
743,839 + -2.0
743,839 + -0.2
743,847 - -1.6
743,848 + +0.8
743,848 + -1.0
743,856 - -1.5
743,866 - -0.8
743,868 - +0.8
743,927 + +1.1
743,927 + +0.8
743,927 + +2.8
743,927 + +1.6
743,935 - -3.2
743,997 + -0.4
743,997 + -1.2
744,013 + -0.4
744,014 + +0.2
744,019 + -0.6
744,021 - +2.0
744,108 - Synpcc7942_0750 0.13 +1.2
744,110 + Synpcc7942_0750 0.13 +1.8
744,110 + Synpcc7942_0750 0.13 -0.2
744,118 - Synpcc7942_0750 0.13 +0.2
744,125 + Synpcc7942_0750 0.14 +0.6
744,142 - Synpcc7942_0750 0.14 +0.8
744,145 + Synpcc7942_0750 0.14 -2.3
744,152 - Synpcc7942_0750 0.15 -3.1
744,153 + Synpcc7942_0750 0.15 +3.7
744,153 - Synpcc7942_0750 0.15 +0.8
744,180 + Synpcc7942_0750 0.15 +0.5
744,188 - Synpcc7942_0750 0.16 +1.1
744,210 + Synpcc7942_0750 0.17 +2.7
744,234 + Synpcc7942_0750 0.17 -1.8
744,264 - Synpcc7942_0750 0.18 +1.0
744,282 - Synpcc7942_0750 0.19 +2.6
744,282 - Synpcc7942_0750 0.19 +1.4
744,288 + Synpcc7942_0750 0.19 -1.5
744,310 + Synpcc7942_0750 0.20 +2.7
744,312 + Synpcc7942_0750 0.20 +0.8
744,317 + Synpcc7942_0750 0.20 -2.2

Or see this region's nucleotide sequence