Experiment: Cephalothin 0.00390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0695 and psbT are separated by 209 nucleotides psbT and psbB are separated by 76 nucleotides psbB and Synpcc7942_0698 are separated by 336 nucleotides Synpcc7942_0698 and psbM are separated by 99 nucleotides
Synpcc7942_0695: Synpcc7942_0695 - hypothetical protein, at 688,334 to 688,840
_0695
Synpcc7942_0696: psbT - photosystem II reaction center protein T, at 689,050 to 689,145
psbT
Synpcc7942_0697: psbB - photosystem II core light harvesting protein, at 689,222 to 690,748
psbB
Synpcc7942_0698: Synpcc7942_0698 - probable ferredoxin, at 691,085 to 691,519
_0698
Synpcc7942_0699: psbM - photosystem II reaction center protein PsbM, at 691,619 to 691,726
psbM
Position (kb) 689
690
691 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 688.236 kb on + strand at 688.365 kb on + strand at 688.386 kb on + strand, within Synpcc7942_0695 at 688.434 kb on + strand, within Synpcc7942_0695 at 688.442 kb on - strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand at 688.552 kb on + strand, within Synpcc7942_0695 at 688.558 kb on - strand, within Synpcc7942_0695 at 688.560 kb on - strand, within Synpcc7942_0695 at 688.560 kb on - strand, within Synpcc7942_0695 at 688.560 kb on - strand, within Synpcc7942_0695 at 688.560 kb on - strand, within Synpcc7942_0695 at 688.560 kb on - strand, within Synpcc7942_0695 at 688.560 kb on - strand, within Synpcc7942_0695 at 688.560 kb on - strand, within Synpcc7942_0695 at 688.560 kb on - strand, within Synpcc7942_0695 at 688.560 kb on - strand, within Synpcc7942_0695 at 688.571 kb on - strand, within Synpcc7942_0695 at 688.622 kb on + strand, within Synpcc7942_0695 at 688.627 kb on + strand, within Synpcc7942_0695 at 688.692 kb on - strand, within Synpcc7942_0695 at 688.722 kb on + strand, within Synpcc7942_0695 at 688.759 kb on - strand, within Synpcc7942_0695 at 688.760 kb on + strand, within Synpcc7942_0695 at 688.787 kb on - strand, within Synpcc7942_0695 at 688.788 kb on - strand, within Synpcc7942_0695 at 688.825 kb on + strand at 688.871 kb on + strand at 689.018 kb on - strand at 689.021 kb on + strand at 689.021 kb on + strand at 689.028 kb on + strand at 689.029 kb on - strand at 689.095 kb on + strand, within psbT at 690.832 kb on - strand at 690.849 kb on - strand at 690.855 kb on + strand at 690.885 kb on + strand at 690.910 kb on - strand at 690.914 kb on - strand at 690.919 kb on - strand at 690.929 kb on - strand at 690.955 kb on - strand at 690.994 kb on + strand at 691.000 kb on - strand at 691.000 kb on - strand at 691.005 kb on - strand at 691.014 kb on - strand at 691.014 kb on - strand at 691.073 kb on - strand at 691.075 kb on + strand at 691.075 kb on + strand at 691.075 kb on + strand at 691.083 kb on - strand at 691.083 kb on - strand at 691.083 kb on - strand at 691.126 kb on - strand at 691.128 kb on - strand at 691.128 kb on - strand at 691.137 kb on + strand, within Synpcc7942_0698 at 691.150 kb on + strand, within Synpcc7942_0698 at 691.150 kb on + strand, within Synpcc7942_0698 at 691.165 kb on + strand at 691.168 kb on - strand, within Synpcc7942_0698 at 691.168 kb on - strand, within Synpcc7942_0698 at 691.177 kb on + strand, within Synpcc7942_0698 at 691.177 kb on + strand, within Synpcc7942_0698 at 691.185 kb on - strand, within Synpcc7942_0698 at 691.185 kb on - strand at 691.186 kb on - strand, within Synpcc7942_0698 at 691.217 kb on - strand at 691.239 kb on - strand, within Synpcc7942_0698 at 691.258 kb on - strand, within Synpcc7942_0698 at 691.291 kb on - strand, within Synpcc7942_0698 at 691.292 kb on - strand at 691.294 kb on + strand, within Synpcc7942_0698 at 691.302 kb on - strand, within Synpcc7942_0698 at 691.306 kb on + strand, within Synpcc7942_0698 at 691.312 kb on + strand, within Synpcc7942_0698 at 691.320 kb on - strand, within Synpcc7942_0698 at 691.333 kb on - strand, within Synpcc7942_0698 at 691.348 kb on + strand, within Synpcc7942_0698 at 691.369 kb on + strand, within Synpcc7942_0698 at 691.381 kb on + strand, within Synpcc7942_0698 at 691.417 kb on + strand, within Synpcc7942_0698 at 691.417 kb on + strand, within Synpcc7942_0698 at 691.417 kb on + strand, within Synpcc7942_0698 at 691.425 kb on - strand, within Synpcc7942_0698 at 691.425 kb on - strand, within Synpcc7942_0698 at 691.475 kb on + strand, within Synpcc7942_0698 at 691.485 kb on + strand at 691.506 kb on - strand at 691.516 kb on - strand at 691.522 kb on - strand at 691.549 kb on + strand at 691.557 kb on - strand at 691.566 kb on + strand at 691.567 kb on - strand at 691.603 kb on - strand at 691.611 kb on + strand at 691.733 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.00390625 mg/ml remove 688,236 + -0.8 688,365 + -3.8 688,386 + Synpcc7942_0695 0.10 -2.2 688,434 + Synpcc7942_0695 0.20 -1.2 688,442 - Synpcc7942_0695 0.21 -0.8 688,552 + Synpcc7942_0695 0.43 -3.8 688,552 + Synpcc7942_0695 0.43 -1.2 688,552 + Synpcc7942_0695 0.43 +1.2 688,552 + Synpcc7942_0695 0.43 -0.2 688,552 + Synpcc7942_0695 0.43 -1.5 688,552 + Synpcc7942_0695 0.43 -5.0 688,552 + Synpcc7942_0695 0.43 -1.2 688,552 + Synpcc7942_0695 0.43 -1.8 688,552 + Synpcc7942_0695 0.43 +0.8 688,552 + Synpcc7942_0695 0.43 -2.5 688,552 + +0.8 688,552 + Synpcc7942_0695 0.43 -0.6 688,558 - Synpcc7942_0695 0.44 -0.2 688,560 - Synpcc7942_0695 0.45 -1.2 688,560 - Synpcc7942_0695 0.45 -0.5 688,560 - Synpcc7942_0695 0.45 -1.7 688,560 - Synpcc7942_0695 0.45 -2.3 688,560 - Synpcc7942_0695 0.45 -1.2 688,560 - Synpcc7942_0695 0.45 -1.2 688,560 - Synpcc7942_0695 0.45 -2.2 688,560 - Synpcc7942_0695 0.45 -2.3 688,560 - Synpcc7942_0695 0.45 -1.8 688,571 - Synpcc7942_0695 0.47 -2.0 688,622 + Synpcc7942_0695 0.57 -1.5 688,627 + Synpcc7942_0695 0.58 -1.9 688,692 - Synpcc7942_0695 0.71 -0.5 688,722 + Synpcc7942_0695 0.77 -1.5 688,759 - Synpcc7942_0695 0.84 -2.0 688,760 + Synpcc7942_0695 0.84 -2.0 688,787 - Synpcc7942_0695 0.89 -0.8 688,788 - Synpcc7942_0695 0.90 -2.5 688,825 + -1.5 688,871 + +0.8 689,018 - -0.8 689,021 + -1.2 689,021 + +0.8 689,028 + +0.8 689,029 - -1.2 689,095 + psbT Synpcc7942_0696 0.47 -1.0 690,832 - +2.8 690,849 - -0.2 690,855 + +1.6 690,885 + -0.3 690,910 - +0.0 690,914 - -0.8 690,919 - -2.5 690,929 - -0.2 690,955 - +3.5 690,994 + +2.3 691,000 - -0.8 691,000 - +3.9 691,005 - -0.8 691,014 - -2.2 691,014 - +0.8 691,073 - +1.4 691,075 + +0.8 691,075 + +0.3 691,075 + -0.4 691,083 - -1.2 691,083 - +1.8 691,083 - -2.2 691,126 - -0.0 691,128 - -1.2 691,128 - +0.8 691,137 + Synpcc7942_0698 0.12 -1.8 691,150 + Synpcc7942_0698 0.15 +1.5 691,150 + Synpcc7942_0698 0.15 -2.2 691,165 + +0.8 691,168 - Synpcc7942_0698 0.19 -1.2 691,168 - Synpcc7942_0698 0.19 +0.2 691,177 + Synpcc7942_0698 0.21 +1.7 691,177 + Synpcc7942_0698 0.21 -1.3 691,185 - Synpcc7942_0698 0.23 +0.8 691,185 - -0.2 691,186 - Synpcc7942_0698 0.23 +1.4 691,217 - +0.8 691,239 - Synpcc7942_0698 0.35 -0.8 691,258 - Synpcc7942_0698 0.40 +0.1 691,291 - Synpcc7942_0698 0.47 -1.5 691,292 - -0.2 691,294 + Synpcc7942_0698 0.48 -1.2 691,302 - Synpcc7942_0698 0.50 +4.5 691,306 + Synpcc7942_0698 0.51 +1.9 691,312 + Synpcc7942_0698 0.52 -1.5 691,320 - Synpcc7942_0698 0.54 +2.2 691,333 - Synpcc7942_0698 0.57 +2.5 691,348 + Synpcc7942_0698 0.60 -2.0 691,369 + Synpcc7942_0698 0.65 +0.1 691,381 + Synpcc7942_0698 0.68 +3.4 691,417 + Synpcc7942_0698 0.76 +2.3 691,417 + Synpcc7942_0698 0.76 -0.2 691,417 + Synpcc7942_0698 0.76 -1.2 691,425 - Synpcc7942_0698 0.78 -1.0 691,425 - Synpcc7942_0698 0.78 -0.2 691,475 + Synpcc7942_0698 0.90 -2.6 691,485 + +1.8 691,506 - +2.9 691,516 - -1.5 691,522 - -2.0 691,549 + +2.5 691,557 - +2.3 691,566 + +1.1 691,567 - +0.1 691,603 - +0.2 691,611 + -1.5 691,733 + +0.2
Or see this region's nucleotide sequence