Experiment: Cephalothin 0.00390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0349 and Synpcc7942_0350 are separated by 349 nucleotides Synpcc7942_0350 and ycf22 are separated by 27 nucleotides
Synpcc7942_0349: Synpcc7942_0349 - hypothetical protein, at 341,883 to 342,443
_0349
Synpcc7942_0350: Synpcc7942_0350 - ATPase, at 342,793 to 343,671
_0350
Synpcc7942_0351: ycf22 - putative ABC transport system substrate-binding protein, at 343,699 to 344,832
ycf22
Position (kb) 342
343
344 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6
7 at 341.800 kb on - strand at 341.838 kb on + strand at 341.851 kb on + strand at 341.851 kb on + strand at 341.859 kb on - strand at 341.859 kb on - strand at 341.880 kb on + strand at 341.880 kb on + strand at 341.880 kb on + strand at 341.882 kb on + strand at 341.888 kb on - strand at 341.900 kb on - strand at 341.906 kb on - strand at 341.934 kb on - strand at 341.965 kb on + strand, within Synpcc7942_0349 at 341.965 kb on - strand, within Synpcc7942_0349 at 342.009 kb on + strand, within Synpcc7942_0349 at 342.019 kb on + strand, within Synpcc7942_0349 at 342.027 kb on - strand, within Synpcc7942_0349 at 342.032 kb on - strand, within Synpcc7942_0349 at 342.032 kb on - strand, within Synpcc7942_0349 at 342.073 kb on - strand, within Synpcc7942_0349 at 342.079 kb on + strand, within Synpcc7942_0349 at 342.167 kb on + strand, within Synpcc7942_0349 at 342.167 kb on + strand, within Synpcc7942_0349 at 342.170 kb on - strand, within Synpcc7942_0349 at 342.175 kb on - strand, within Synpcc7942_0349 at 342.175 kb on - strand, within Synpcc7942_0349 at 342.190 kb on + strand, within Synpcc7942_0349 at 342.198 kb on - strand, within Synpcc7942_0349 at 342.209 kb on + strand, within Synpcc7942_0349 at 342.285 kb on + strand, within Synpcc7942_0349 at 342.286 kb on - strand, within Synpcc7942_0349 at 342.344 kb on - strand, within Synpcc7942_0349 at 342.359 kb on + strand, within Synpcc7942_0349 at 342.359 kb on + strand, within Synpcc7942_0349 at 342.359 kb on + strand, within Synpcc7942_0349 at 342.393 kb on + strand at 342.450 kb on + strand at 342.450 kb on + strand at 342.458 kb on - strand at 342.473 kb on + strand at 342.473 kb on + strand at 342.475 kb on + strand at 342.488 kb on + strand at 342.529 kb on + strand at 342.544 kb on - strand at 342.549 kb on - strand at 342.549 kb on - strand at 342.549 kb on - strand at 342.556 kb on + strand at 342.559 kb on - strand at 342.564 kb on - strand at 342.569 kb on - strand at 342.592 kb on - strand at 342.610 kb on - strand at 342.647 kb on - strand at 342.647 kb on - strand at 342.689 kb on + strand at 342.689 kb on - strand at 342.694 kb on - strand at 342.694 kb on - strand at 342.699 kb on + strand at 342.706 kb on + strand at 342.706 kb on + strand at 342.709 kb on - strand at 342.711 kb on + strand at 342.711 kb on + strand at 342.719 kb on - strand at 342.719 kb on - strand at 342.731 kb on + strand at 342.774 kb on + strand at 342.800 kb on + strand at 342.801 kb on + strand at 342.801 kb on + strand at 342.801 kb on + strand at 342.811 kb on - strand at 342.835 kb on + strand at 342.845 kb on + strand at 342.872 kb on - strand at 342.875 kb on + strand at 342.901 kb on + strand, within Synpcc7942_0350 at 342.901 kb on - strand, within Synpcc7942_0350 at 342.949 kb on + strand, within Synpcc7942_0350 at 342.949 kb on - strand, within Synpcc7942_0350 at 342.957 kb on - strand, within Synpcc7942_0350 at 342.957 kb on - strand, within Synpcc7942_0350 at 342.959 kb on + strand, within Synpcc7942_0350 at 342.959 kb on + strand, within Synpcc7942_0350 at 342.959 kb on + strand, within Synpcc7942_0350 at 342.959 kb on + strand, within Synpcc7942_0350 at 342.962 kb on - strand, within Synpcc7942_0350 at 342.966 kb on + strand, within Synpcc7942_0350 at 342.967 kb on - strand, within Synpcc7942_0350 at 342.981 kb on - strand, within Synpcc7942_0350 at 343.015 kb on - strand, within Synpcc7942_0350 at 343.048 kb on + strand, within Synpcc7942_0350 at 343.050 kb on - strand, within Synpcc7942_0350 at 343.074 kb on + strand, within Synpcc7942_0350 at 343.074 kb on + strand, within Synpcc7942_0350 at 343.085 kb on + strand, within Synpcc7942_0350 at 343.092 kb on + strand, within Synpcc7942_0350 at 343.092 kb on + strand, within Synpcc7942_0350 at 343.095 kb on - strand, within Synpcc7942_0350 at 343.119 kb on + strand, within Synpcc7942_0350 at 343.119 kb on + strand, within Synpcc7942_0350 at 343.119 kb on + strand, within Synpcc7942_0350 at 343.126 kb on - strand, within Synpcc7942_0350 at 343.127 kb on - strand, within Synpcc7942_0350 at 343.127 kb on - strand, within Synpcc7942_0350 at 343.127 kb on - strand, within Synpcc7942_0350 at 343.164 kb on + strand, within Synpcc7942_0350 at 343.172 kb on - strand, within Synpcc7942_0350 at 343.172 kb on - strand, within Synpcc7942_0350 at 343.184 kb on + strand, within Synpcc7942_0350 at 343.221 kb on + strand, within Synpcc7942_0350 at 343.221 kb on + strand, within Synpcc7942_0350 at 343.221 kb on + strand, within Synpcc7942_0350 at 343.237 kb on + strand, within Synpcc7942_0350 at 343.266 kb on - strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.271 kb on - strand, within Synpcc7942_0350 at 343.276 kb on - strand, within Synpcc7942_0350 at 343.276 kb on - strand, within Synpcc7942_0350 at 343.276 kb on - strand, within Synpcc7942_0350 at 343.276 kb on - strand at 343.276 kb on - strand, within Synpcc7942_0350 at 343.276 kb on - strand, within Synpcc7942_0350 at 343.278 kb on + strand, within Synpcc7942_0350 at 343.301 kb on + strand, within Synpcc7942_0350 at 343.301 kb on + strand, within Synpcc7942_0350 at 343.309 kb on - strand, within Synpcc7942_0350 at 343.311 kb on + strand, within Synpcc7942_0350 at 343.311 kb on + strand, within Synpcc7942_0350 at 343.311 kb on + strand, within Synpcc7942_0350 at 343.319 kb on - strand, within Synpcc7942_0350 at 343.331 kb on - strand, within Synpcc7942_0350 at 343.355 kb on + strand, within Synpcc7942_0350 at 343.360 kb on + strand, within Synpcc7942_0350 at 343.361 kb on - strand, within Synpcc7942_0350 at 343.363 kb on - strand, within Synpcc7942_0350 at 343.407 kb on + strand, within Synpcc7942_0350 at 343.426 kb on - strand, within Synpcc7942_0350 at 343.426 kb on - strand, within Synpcc7942_0350 at 343.426 kb on - strand, within Synpcc7942_0350 at 343.433 kb on + strand, within Synpcc7942_0350 at 343.458 kb on - strand, within Synpcc7942_0350 at 343.463 kb on + strand, within Synpcc7942_0350 at 343.471 kb on - strand, within Synpcc7942_0350 at 343.471 kb on - strand, within Synpcc7942_0350 at 343.480 kb on + strand at 343.488 kb on - strand, within Synpcc7942_0350 at 343.509 kb on + strand, within Synpcc7942_0350 at 343.530 kb on - strand, within Synpcc7942_0350 at 343.535 kb on + strand, within Synpcc7942_0350 at 343.564 kb on - strand, within Synpcc7942_0350 at 343.576 kb on - strand, within Synpcc7942_0350 at 343.591 kb on + strand at 343.596 kb on + strand at 343.599 kb on - strand at 343.606 kb on + strand at 343.611 kb on + strand at 343.701 kb on - strand at 343.727 kb on + strand at 343.769 kb on + strand at 343.791 kb on + strand at 343.804 kb on - strand at 343.841 kb on + strand, within ycf22 at 343.880 kb on + strand, within ycf22 at 343.897 kb on + strand, within ycf22 at 343.912 kb on + strand, within ycf22 at 343.915 kb on - strand, within ycf22 at 343.915 kb on - strand, within ycf22 at 343.920 kb on - strand, within ycf22 at 343.922 kb on + strand, within ycf22 at 343.925 kb on - strand, within ycf22 at 343.925 kb on - strand, within ycf22 at 343.925 kb on - strand, within ycf22 at 343.925 kb on - strand, within ycf22 at 343.933 kb on - strand, within ycf22 at 344.003 kb on - strand, within ycf22 at 344.015 kb on + strand, within ycf22 at 344.022 kb on + strand, within ycf22 at 344.022 kb on + strand, within ycf22 at 344.064 kb on + strand, within ycf22 at 344.064 kb on + strand, within ycf22 at 344.127 kb on + strand, within ycf22 at 344.131 kb on - strand, within ycf22 at 344.184 kb on + strand, within ycf22 at 344.202 kb on + strand, within ycf22 at 344.210 kb on - strand, within ycf22 at 344.210 kb on - strand, within ycf22 at 344.211 kb on + strand, within ycf22 at 344.211 kb on + strand, within ycf22 at 344.219 kb on - strand, within ycf22 at 344.277 kb on - strand, within ycf22 at 344.315 kb on - strand, within ycf22 at 344.326 kb on + strand, within ycf22 at 344.334 kb on - strand, within ycf22 at 344.361 kb on - strand, within ycf22 at 344.389 kb on + strand, within ycf22 at 344.439 kb on - strand, within ycf22 at 344.441 kb on + strand, within ycf22 at 344.449 kb on - strand, within ycf22 at 344.449 kb on - strand, within ycf22 at 344.449 kb on - strand, within ycf22 at 344.449 kb on - strand, within ycf22 at 344.449 kb on - strand, within ycf22 at 344.518 kb on - strand, within ycf22 at 344.518 kb on - strand, within ycf22 at 344.551 kb on + strand, within ycf22 at 344.559 kb on - strand, within ycf22 at 344.559 kb on - strand, within ycf22 at 344.587 kb on - strand, within ycf22 at 344.591 kb on + strand, within ycf22 at 344.641 kb on + strand, within ycf22
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.00390625 mg/ml remove 341,800 - -1.1 341,838 + -2.7 341,851 + -0.1 341,851 + -3.1 341,859 - +2.1 341,859 - -2.0 341,880 + -2.4 341,880 + -0.1 341,880 + -1.4 341,882 + +1.5 341,888 - +0.4 341,900 - -2.6 341,906 - -1.1 341,934 - -2.8 341,965 + Synpcc7942_0349 0.15 -0.7 341,965 - Synpcc7942_0349 0.15 -3.9 342,009 + Synpcc7942_0349 0.22 -1.6 342,019 + Synpcc7942_0349 0.24 -0.1 342,027 - Synpcc7942_0349 0.26 -0.1 342,032 - Synpcc7942_0349 0.27 -1.7 342,032 - Synpcc7942_0349 0.27 -0.7 342,073 - Synpcc7942_0349 0.34 +0.9 342,079 + Synpcc7942_0349 0.35 -1.7 342,167 + Synpcc7942_0349 0.51 -0.7 342,167 + Synpcc7942_0349 0.51 -1.7 342,170 - Synpcc7942_0349 0.51 -1.4 342,175 - Synpcc7942_0349 0.52 -1.9 342,175 - Synpcc7942_0349 0.52 -1.4 342,190 + Synpcc7942_0349 0.55 -0.1 342,198 - Synpcc7942_0349 0.56 -1.1 342,209 + Synpcc7942_0349 0.58 -0.1 342,285 + Synpcc7942_0349 0.72 +0.9 342,286 - Synpcc7942_0349 0.72 -1.7 342,344 - Synpcc7942_0349 0.82 -2.7 342,359 + Synpcc7942_0349 0.85 -0.1 342,359 + Synpcc7942_0349 0.85 -0.7 342,359 + Synpcc7942_0349 0.85 +1.0 342,393 + -1.7 342,450 + -1.9 342,450 + +0.9 342,458 - -0.7 342,473 + -2.3 342,473 + +0.2 342,475 + -0.1 342,488 + +1.1 342,529 + -0.7 342,544 - -0.4 342,549 - -1.4 342,549 - -2.3 342,549 - -0.2 342,556 + -1.1 342,559 - +0.8 342,564 - +2.5 342,569 - +1.9 342,592 - +1.9 342,610 - -0.0 342,647 - -0.8 342,647 - +0.8 342,689 + +5.0 342,689 - +1.2 342,694 - +0.2 342,694 - -1.4 342,699 + -1.9 342,706 + -1.1 342,706 + -1.7 342,709 - +0.2 342,711 + -0.1 342,711 + -0.7 342,719 - -1.7 342,719 - -2.4 342,731 + +0.1 342,774 + +1.9 342,800 + +2.3 342,801 + -0.1 342,801 + -0.4 342,801 + -0.1 342,811 - +1.4 342,835 + +1.8 342,845 + -2.5 342,872 - -0.7 342,875 + -0.2 342,901 + Synpcc7942_0350 0.12 +1.9 342,901 - Synpcc7942_0350 0.12 +4.2 342,949 + Synpcc7942_0350 0.18 +2.4 342,949 - Synpcc7942_0350 0.18 +6.1 342,957 - Synpcc7942_0350 0.19 +3.9 342,957 - Synpcc7942_0350 0.19 +5.9 342,959 + Synpcc7942_0350 0.19 +3.5 342,959 + Synpcc7942_0350 0.19 +5.2 342,959 + Synpcc7942_0350 0.19 -2.1 342,959 + Synpcc7942_0350 0.19 +1.4 342,962 - Synpcc7942_0350 0.19 +3.2 342,966 + Synpcc7942_0350 0.20 +3.0 342,967 - Synpcc7942_0350 0.20 +2.3 342,981 - Synpcc7942_0350 0.21 +3.4 343,015 - Synpcc7942_0350 0.25 +2.7 343,048 + Synpcc7942_0350 0.29 +4.3 343,050 - Synpcc7942_0350 0.29 +4.4 343,074 + Synpcc7942_0350 0.32 +5.3 343,074 + Synpcc7942_0350 0.32 -0.4 343,085 + Synpcc7942_0350 0.33 +4.2 343,092 + Synpcc7942_0350 0.34 +4.6 343,092 + Synpcc7942_0350 0.34 +2.2 343,095 - Synpcc7942_0350 0.34 +4.4 343,119 + Synpcc7942_0350 0.37 +4.6 343,119 + Synpcc7942_0350 0.37 +4.6 343,119 + Synpcc7942_0350 0.37 +2.6 343,126 - Synpcc7942_0350 0.38 +3.8 343,127 - Synpcc7942_0350 0.38 +4.7 343,127 - Synpcc7942_0350 0.38 +3.8 343,127 - Synpcc7942_0350 0.38 +4.4 343,164 + Synpcc7942_0350 0.42 +3.3 343,172 - Synpcc7942_0350 0.43 +4.3 343,172 - Synpcc7942_0350 0.43 +4.6 343,184 + Synpcc7942_0350 0.44 +6.9 343,221 + Synpcc7942_0350 0.49 +1.2 343,221 + Synpcc7942_0350 0.49 -1.1 343,221 + Synpcc7942_0350 0.49 +3.0 343,237 + Synpcc7942_0350 0.51 +0.9 343,266 - Synpcc7942_0350 0.54 +4.0 343,268 + Synpcc7942_0350 0.54 +4.1 343,268 + Synpcc7942_0350 0.54 +3.7 343,268 + Synpcc7942_0350 0.54 +4.5 343,268 + Synpcc7942_0350 0.54 +2.7 343,268 + Synpcc7942_0350 0.54 +3.8 343,268 + Synpcc7942_0350 0.54 +3.3 343,268 + Synpcc7942_0350 0.54 -1.9 343,268 + Synpcc7942_0350 0.54 +4.0 343,268 + Synpcc7942_0350 0.54 +1.3 343,268 + Synpcc7942_0350 0.54 +2.2 343,271 - Synpcc7942_0350 0.54 +3.1 343,276 - Synpcc7942_0350 0.55 +0.9 343,276 - Synpcc7942_0350 0.55 +2.9 343,276 - Synpcc7942_0350 0.55 +0.9 343,276 - -0.1 343,276 - Synpcc7942_0350 0.55 +0.9 343,276 - Synpcc7942_0350 0.55 +4.7 343,278 + Synpcc7942_0350 0.55 +4.3 343,301 + Synpcc7942_0350 0.58 +2.9 343,301 + Synpcc7942_0350 0.58 +4.7 343,309 - Synpcc7942_0350 0.59 -2.1 343,311 + Synpcc7942_0350 0.59 +2.8 343,311 + Synpcc7942_0350 0.59 +4.8 343,311 + Synpcc7942_0350 0.59 +4.2 343,319 - Synpcc7942_0350 0.60 +0.1 343,331 - Synpcc7942_0350 0.61 +5.2 343,355 + Synpcc7942_0350 0.64 +3.2 343,360 + Synpcc7942_0350 0.65 +4.3 343,361 - Synpcc7942_0350 0.65 -0.3 343,363 - Synpcc7942_0350 0.65 +4.0 343,407 + Synpcc7942_0350 0.70 +4.0 343,426 - Synpcc7942_0350 0.72 +2.2 343,426 - Synpcc7942_0350 0.72 -1.9 343,426 - Synpcc7942_0350 0.72 +3.5 343,433 + Synpcc7942_0350 0.73 +3.8 343,458 - Synpcc7942_0350 0.76 +5.8 343,463 + Synpcc7942_0350 0.76 +6.3 343,471 - Synpcc7942_0350 0.77 +3.6 343,471 - Synpcc7942_0350 0.77 -0.4 343,480 + +4.4 343,488 - Synpcc7942_0350 0.79 +2.9 343,509 + Synpcc7942_0350 0.81 -2.1 343,530 - Synpcc7942_0350 0.84 +2.4 343,535 + Synpcc7942_0350 0.84 +4.0 343,564 - Synpcc7942_0350 0.88 +3.6 343,576 - Synpcc7942_0350 0.89 +2.8 343,591 + +1.9 343,596 + +1.9 343,599 - +1.4 343,606 + +2.6 343,611 + +4.2 343,701 - +1.5 343,727 + +2.7 343,769 + +4.4 343,791 + +0.8 343,804 - +4.0 343,841 + ycf22 Synpcc7942_0351 0.13 +2.3 343,880 + ycf22 Synpcc7942_0351 0.16 -0.1 343,897 + ycf22 Synpcc7942_0351 0.17 +0.5 343,912 + ycf22 Synpcc7942_0351 0.19 +2.3 343,915 - ycf22 Synpcc7942_0351 0.19 +1.9 343,915 - ycf22 Synpcc7942_0351 0.19 +1.8 343,920 - ycf22 Synpcc7942_0351 0.19 +6.2 343,922 + ycf22 Synpcc7942_0351 0.20 +4.6 343,925 - ycf22 Synpcc7942_0351 0.20 +5.2 343,925 - ycf22 Synpcc7942_0351 0.20 +0.9 343,925 - ycf22 Synpcc7942_0351 0.20 +4.6 343,925 - ycf22 Synpcc7942_0351 0.20 +5.5 343,933 - ycf22 Synpcc7942_0351 0.21 +2.4 344,003 - ycf22 Synpcc7942_0351 0.27 -1.4 344,015 + ycf22 Synpcc7942_0351 0.28 -1.4 344,022 + ycf22 Synpcc7942_0351 0.28 +4.2 344,022 + ycf22 Synpcc7942_0351 0.28 +2.0 344,064 + ycf22 Synpcc7942_0351 0.32 +3.5 344,064 + ycf22 Synpcc7942_0351 0.32 +3.8 344,127 + ycf22 Synpcc7942_0351 0.38 +0.9 344,131 - ycf22 Synpcc7942_0351 0.38 +4.6 344,184 + ycf22 Synpcc7942_0351 0.43 -2.4 344,202 + ycf22 Synpcc7942_0351 0.44 +2.0 344,210 - ycf22 Synpcc7942_0351 0.45 +3.8 344,210 - ycf22 Synpcc7942_0351 0.45 -0.1 344,211 + ycf22 Synpcc7942_0351 0.45 +3.7 344,211 + ycf22 Synpcc7942_0351 0.45 +4.4 344,219 - ycf22 Synpcc7942_0351 0.46 +0.6 344,277 - ycf22 Synpcc7942_0351 0.51 +1.9 344,315 - ycf22 Synpcc7942_0351 0.54 +0.4 344,326 + ycf22 Synpcc7942_0351 0.55 +3.6 344,334 - ycf22 Synpcc7942_0351 0.56 +1.4 344,361 - ycf22 Synpcc7942_0351 0.58 +4.5 344,389 + ycf22 Synpcc7942_0351 0.61 +2.9 344,439 - ycf22 Synpcc7942_0351 0.65 +1.8 344,441 + ycf22 Synpcc7942_0351 0.65 +3.7 344,449 - ycf22 Synpcc7942_0351 0.66 -0.7 344,449 - ycf22 Synpcc7942_0351 0.66 +3.2 344,449 - ycf22 Synpcc7942_0351 0.66 +3.5 344,449 - ycf22 Synpcc7942_0351 0.66 +2.9 344,449 - ycf22 Synpcc7942_0351 0.66 +1.5 344,518 - ycf22 Synpcc7942_0351 0.72 +1.6 344,518 - ycf22 Synpcc7942_0351 0.72 -0.3 344,551 + ycf22 Synpcc7942_0351 0.75 +2.7 344,559 - ycf22 Synpcc7942_0351 0.76 -1.4 344,559 - ycf22 Synpcc7942_0351 0.76 +2.3 344,587 - ycf22 Synpcc7942_0351 0.78 +5.0 344,591 + ycf22 Synpcc7942_0351 0.79 -0.7 344,641 + ycf22 Synpcc7942_0351 0.83 +3.1
Or see this region's nucleotide sequence