Experiment: Cephalothin 0.00390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt apcE and Synpcc7942_0329 are separated by 214 nucleotides Synpcc7942_0329 and atp1 are separated by 36 nucleotides atp1 and atpI are separated by 25 nucleotides
Synpcc7942_0328: apcE - phycobilisome core-membrane linker polypeptide, at 323,781 to 325,898
apcE
Synpcc7942_0329: Synpcc7942_0329 - hypothetical protein, at 326,113 to 327,357
_0329
Synpcc7942_0330: atp1 - hypothetical protein, at 327,394 to 327,900
atp1
Synpcc7942_0331: atpI - F0F1 ATP synthase subunit A, at 327,926 to 328,711
atpI
Position (kb)
326
327
328 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 326.081 kb on + strand at 326.089 kb on - strand at 326.115 kb on + strand at 326.125 kb on + strand at 326.166 kb on - strand at 326.166 kb on - strand at 326.171 kb on - strand at 326.196 kb on + strand at 326.196 kb on + strand at 326.204 kb on - strand at 326.204 kb on - strand at 326.211 kb on - strand at 326.219 kb on - strand at 326.224 kb on - strand at 326.227 kb on + strand at 326.264 kb on + strand, within Synpcc7942_0329 at 326.264 kb on + strand, within Synpcc7942_0329 at 326.265 kb on + strand, within Synpcc7942_0329 at 326.272 kb on - strand, within Synpcc7942_0329 at 326.273 kb on - strand, within Synpcc7942_0329 at 326.277 kb on + strand, within Synpcc7942_0329 at 326.278 kb on + strand, within Synpcc7942_0329 at 326.278 kb on + strand, within Synpcc7942_0329 at 326.279 kb on - strand, within Synpcc7942_0329 at 326.286 kb on - strand, within Synpcc7942_0329 at 326.364 kb on - strand, within Synpcc7942_0329 at 326.376 kb on + strand, within Synpcc7942_0329 at 326.384 kb on - strand, within Synpcc7942_0329 at 326.384 kb on - strand, within Synpcc7942_0329 at 326.402 kb on - strand, within Synpcc7942_0329 at 326.404 kb on + strand, within Synpcc7942_0329 at 326.445 kb on - strand, within Synpcc7942_0329 at 326.447 kb on + strand, within Synpcc7942_0329 at 326.458 kb on + strand, within Synpcc7942_0329 at 326.495 kb on - strand, within Synpcc7942_0329 at 326.500 kb on - strand, within Synpcc7942_0329 at 326.512 kb on - strand, within Synpcc7942_0329 at 326.513 kb on + strand, within Synpcc7942_0329 at 326.530 kb on + strand, within Synpcc7942_0329 at 326.530 kb on - strand, within Synpcc7942_0329 at 326.540 kb on - strand, within Synpcc7942_0329 at 326.548 kb on + strand, within Synpcc7942_0329 at 326.548 kb on + strand, within Synpcc7942_0329 at 326.548 kb on + strand, within Synpcc7942_0329 at 326.548 kb on - strand, within Synpcc7942_0329 at 326.610 kb on + strand, within Synpcc7942_0329 at 326.620 kb on + strand, within Synpcc7942_0329 at 326.620 kb on - strand, within Synpcc7942_0329 at 326.629 kb on - strand, within Synpcc7942_0329 at 326.684 kb on + strand, within Synpcc7942_0329 at 326.688 kb on + strand, within Synpcc7942_0329 at 326.688 kb on + strand, within Synpcc7942_0329 at 326.688 kb on + strand, within Synpcc7942_0329 at 326.692 kb on - strand, within Synpcc7942_0329 at 326.696 kb on - strand, within Synpcc7942_0329 at 326.696 kb on - strand, within Synpcc7942_0329 at 326.696 kb on - strand, within Synpcc7942_0329 at 326.696 kb on - strand, within Synpcc7942_0329 at 326.711 kb on - strand, within Synpcc7942_0329 at 326.836 kb on + strand, within Synpcc7942_0329 at 326.845 kb on - strand, within Synpcc7942_0329 at 326.850 kb on - strand, within Synpcc7942_0329 at 326.888 kb on + strand, within Synpcc7942_0329 at 326.888 kb on + strand, within Synpcc7942_0329 at 326.888 kb on + strand, within Synpcc7942_0329 at 326.896 kb on - strand, within Synpcc7942_0329 at 326.902 kb on + strand, within Synpcc7942_0329 at 326.920 kb on - strand, within Synpcc7942_0329 at 326.966 kb on + strand, within Synpcc7942_0329 at 326.971 kb on - strand, within Synpcc7942_0329 at 326.974 kb on - strand, within Synpcc7942_0329 at 326.974 kb on - strand, within Synpcc7942_0329 at 326.974 kb on - strand, within Synpcc7942_0329 at 327.069 kb on - strand, within Synpcc7942_0329 at 327.081 kb on + strand, within Synpcc7942_0329 at 327.084 kb on - strand, within Synpcc7942_0329 at 327.095 kb on + strand, within Synpcc7942_0329 at 327.103 kb on - strand, within Synpcc7942_0329 at 327.153 kb on - strand, within Synpcc7942_0329 at 327.199 kb on - strand, within Synpcc7942_0329 at 327.199 kb on - strand, within Synpcc7942_0329 at 327.199 kb on - strand, within Synpcc7942_0329 at 327.206 kb on - strand, within Synpcc7942_0329 at 327.209 kb on - strand, within Synpcc7942_0329 at 327.211 kb on + strand, within Synpcc7942_0329 at 327.211 kb on + strand, within Synpcc7942_0329 at 327.219 kb on - strand, within Synpcc7942_0329 at 327.221 kb on + strand, within Synpcc7942_0329 at 327.221 kb on + strand, within Synpcc7942_0329 at 327.229 kb on - strand at 327.229 kb on - strand, within Synpcc7942_0329 at 327.360 kb on - strand at 327.362 kb on + strand at 327.370 kb on - strand at 327.370 kb on - strand at 327.370 kb on - strand at 327.370 kb on - strand at 327.380 kb on - strand at 327.960 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.00390625 mg/ml remove 326,081 + -0.7 326,089 - +0.9 326,115 + +0.3 326,125 + +0.7 326,166 - -3.8 326,166 - -1.9 326,171 - +0.6 326,196 + +0.7 326,196 + -1.0 326,204 - +1.1 326,204 - -1.7 326,211 - +0.6 326,219 - +1.9 326,224 - +3.1 326,227 + -0.1 326,264 + Synpcc7942_0329 0.12 +1.5 326,264 + Synpcc7942_0329 0.12 -1.9 326,265 + Synpcc7942_0329 0.12 +0.5 326,272 - Synpcc7942_0329 0.13 -0.7 326,273 - Synpcc7942_0329 0.13 -2.1 326,277 + Synpcc7942_0329 0.13 +0.3 326,278 + Synpcc7942_0329 0.13 -1.4 326,278 + Synpcc7942_0329 0.13 -1.2 326,279 - Synpcc7942_0329 0.13 -0.4 326,286 - Synpcc7942_0329 0.14 -0.7 326,364 - Synpcc7942_0329 0.20 -1.4 326,376 + Synpcc7942_0329 0.21 +1.4 326,384 - Synpcc7942_0329 0.22 -0.7 326,384 - Synpcc7942_0329 0.22 -1.1 326,402 - Synpcc7942_0329 0.23 +1.7 326,404 + Synpcc7942_0329 0.23 -0.5 326,445 - Synpcc7942_0329 0.27 -1.7 326,447 + Synpcc7942_0329 0.27 -2.3 326,458 + Synpcc7942_0329 0.28 +0.9 326,495 - Synpcc7942_0329 0.31 +0.5 326,500 - Synpcc7942_0329 0.31 -1.4 326,512 - Synpcc7942_0329 0.32 -1.1 326,513 + Synpcc7942_0329 0.32 -2.3 326,530 + Synpcc7942_0329 0.33 -1.9 326,530 - Synpcc7942_0329 0.33 +2.2 326,540 - Synpcc7942_0329 0.34 -4.8 326,548 + Synpcc7942_0329 0.35 -0.7 326,548 + Synpcc7942_0329 0.35 -0.7 326,548 + Synpcc7942_0329 0.35 -1.2 326,548 - Synpcc7942_0329 0.35 +2.0 326,610 + Synpcc7942_0329 0.40 -2.1 326,620 + Synpcc7942_0329 0.41 -0.1 326,620 - Synpcc7942_0329 0.41 -1.1 326,629 - Synpcc7942_0329 0.41 -1.4 326,684 + Synpcc7942_0329 0.46 -2.4 326,688 + Synpcc7942_0329 0.46 -2.4 326,688 + Synpcc7942_0329 0.46 +0.7 326,688 + Synpcc7942_0329 0.46 -1.1 326,692 - Synpcc7942_0329 0.47 -1.4 326,696 - Synpcc7942_0329 0.47 -1.7 326,696 - Synpcc7942_0329 0.47 +1.2 326,696 - Synpcc7942_0329 0.47 +0.7 326,696 - Synpcc7942_0329 0.47 -0.7 326,711 - Synpcc7942_0329 0.48 -1.7 326,836 + Synpcc7942_0329 0.58 -1.1 326,845 - Synpcc7942_0329 0.59 -1.7 326,850 - Synpcc7942_0329 0.59 +0.9 326,888 + Synpcc7942_0329 0.62 -1.4 326,888 + Synpcc7942_0329 0.62 +0.5 326,888 + Synpcc7942_0329 0.62 -0.1 326,896 - Synpcc7942_0329 0.63 +3.6 326,902 + Synpcc7942_0329 0.63 -1.7 326,920 - Synpcc7942_0329 0.65 -2.8 326,966 + Synpcc7942_0329 0.69 -2.1 326,971 - Synpcc7942_0329 0.69 -0.1 326,974 - Synpcc7942_0329 0.69 +1.6 326,974 - Synpcc7942_0329 0.69 -2.4 326,974 - Synpcc7942_0329 0.69 -0.7 327,069 - Synpcc7942_0329 0.77 +1.6 327,081 + Synpcc7942_0329 0.78 -2.7 327,084 - Synpcc7942_0329 0.78 +0.2 327,095 + Synpcc7942_0329 0.79 +0.4 327,103 - Synpcc7942_0329 0.80 -2.1 327,153 - Synpcc7942_0329 0.84 -2.1 327,199 - Synpcc7942_0329 0.87 -0.7 327,199 - Synpcc7942_0329 0.87 +2.6 327,199 - Synpcc7942_0329 0.87 +0.2 327,206 - Synpcc7942_0329 0.88 +2.1 327,209 - Synpcc7942_0329 0.88 -2.8 327,211 + Synpcc7942_0329 0.88 +0.2 327,211 + Synpcc7942_0329 0.88 -0.9 327,219 - Synpcc7942_0329 0.89 +3.5 327,221 + Synpcc7942_0329 0.89 -1.4 327,221 + Synpcc7942_0329 0.89 -1.0 327,229 - -1.7 327,229 - Synpcc7942_0329 0.90 +0.9 327,360 - +1.0 327,362 + +0.2 327,370 - -1.7 327,370 - -1.9 327,370 - +1.5 327,370 - +0.9 327,380 - +0.9 327,960 - -2.7
Or see this region's nucleotide sequence