Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36040

Experiment: R2A with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.005 mg/ml
3,534,683	-		RR42_RS36035	0.67	-0.2
3,534,708	-		RR42_RS36035	0.68	-0.5
3,534,725	+		RR42_RS36035	0.68	+0.4
3,534,752	+		RR42_RS36035	0.70	+0.2
3,534,752	+		RR42_RS36035	0.70	+2.4
3,534,752	+		RR42_RS36035	0.70	+1.4
3,534,753	-		RR42_RS36035	0.70	-0.5
3,534,753	-		RR42_RS36035	0.70	+0.1
3,534,753	-		RR42_RS36035	0.70	+0.1
3,534,761	+		RR42_RS36035	0.70	-0.5
3,535,180	+		RR42_RS36035	0.88	-0.6
3,535,181	-		RR42_RS36035	0.88	+0.3
3,535,184	+		RR42_RS36035	0.88	+0.3
3,535,184	+		RR42_RS36035	0.88	+0.3
3,535,184	+		RR42_RS36035	0.88	-0.6
3,535,184	+		RR42_RS36035	0.88	+0.0
3,535,185	-		RR42_RS36035	0.89	-1.7
3,535,223	+				+0.8
3,535,223	+				+0.1
3,535,224	-				-0.9
3,535,224	-				+0.0
3,535,226	+				+0.0
3,535,226	+				+0.1
3,535,226	+				-0.4
3,535,226	+				-0.2
3,535,227	-				-1.4
3,535,304	+				+0.4
3,535,364	+				+0.3
3,535,365	-				-0.9
3,535,367	+				-0.7
3,535,367	+				-0.7
3,535,368	-				-1.0
3,535,368	-				-0.5
3,535,368	-				+1.0
3,535,368	-				-0.2
3,535,368	-				-0.3
3,535,391	+				-1.0
3,535,392	-				-0.0
3,535,500	+				+0.4
3,535,500	+				+0.1
3,535,500	+				+0.5
3,535,500	+				-0.3
3,535,500	+				-0.9
3,535,500	+				-0.7
3,535,500	+				+0.4
3,535,500	+				-0.9
3,535,501	-				+0.4
3,535,501	-				+0.8
3,535,501	-				+0.7
3,535,501	-				+0.2
3,535,501	-				+0.2
3,535,501	-				+0.1
3,535,543	+				-0.6
3,535,556	+				+0.4
3,535,556	+				+1.0
3,535,556	+				-0.5
3,535,556	+				-0.2
3,535,556	+				-1.6
3,535,556	+				-0.3
3,535,556	+				-0.9
3,535,557	-				-0.3
3,535,557	-				+1.7
3,535,557	-				+0.8
3,535,557	-				+0.6
3,535,557	-				+0.8
3,535,557	-				+0.1
3,535,557	-				-2.9
3,535,557	-				+0.7
3,535,557	-				-1.1
3,535,557	-				+0.3
3,535,557	-				+1.0
3,535,557	-				-0.9
3,535,575	-				-0.1
3,536,009	-		RR42_RS36040	0.16	-0.8
3,536,290	+		RR42_RS36040	0.29	-0.7
3,536,291	-		RR42_RS36040	0.29	-1.8
3,536,398	+		RR42_RS36040	0.33	+0.5
3,536,398	+		RR42_RS36040	0.33	+0.1
3,536,399	-		RR42_RS36040	0.34	+1.4
3,536,401	+		RR42_RS36040	0.34	+0.2
3,536,402	-		RR42_RS36040	0.34	+0.5
3,536,402	-		RR42_RS36040	0.34	+0.3
3,536,402	-		RR42_RS36040	0.34	+0.6
3,536,443	+		RR42_RS36040	0.35	+0.8
3,536,536	+		RR42_RS36040	0.40	-0.4
3,536,536	+		RR42_RS36040	0.40	+0.9
3,536,536	+		RR42_RS36040	0.40	-0.4
3,536,536	+		RR42_RS36040	0.40	+1.4
3,536,537	-		RR42_RS36040	0.40	+0.2
3,536,540	-		RR42_RS36040	0.40	-0.2
3,536,644	-		RR42_RS36040	0.44	-0.6
3,536,665	+		RR42_RS36040	0.45	+0.8
3,536,666	-		RR42_RS36040	0.45	+0.4
3,536,666	-		RR42_RS36040	0.45	+2.4
3,536,666	-		RR42_RS36040	0.45	-0.2
3,536,704	+		RR42_RS36040	0.47	+0.8
3,536,707	+		RR42_RS36040	0.47	+1.7
3,536,707	+		RR42_RS36040	0.47	-0.1
3,536,815	+		RR42_RS36040	0.52	+1.1
3,536,863	+		RR42_RS36040	0.54	+0.5
3,536,863	+		RR42_RS36040	0.54	+0.8
3,536,864	-		RR42_RS36040	0.54	-0.2
3,536,864	-		RR42_RS36040	0.54	+1.7
3,536,864	-		RR42_RS36040	0.54	+0.1
3,536,920	+		RR42_RS36040	0.56	+1.0
3,536,938	+		RR42_RS36040	0.57	-1.0
3,536,939	-		RR42_RS36040	0.57	+0.4
3,537,026	-		RR42_RS36040	0.61	-1.3
3,537,091	+		RR42_RS36040	0.64	-0.8
3,537,169	+		RR42_RS36040	0.67	+1.0
3,537,169	+		RR42_RS36040	0.67	+0.3
3,537,187	+		RR42_RS36040	0.68	+1.6
3,537,187	+		RR42_RS36040	0.68	-0.8
3,537,187	+		RR42_RS36040	0.68	+0.7
3,537,214	+		RR42_RS36040	0.69	+0.5
3,537,540	+		RR42_RS36040	0.83	+0.0
3,537,540	+		RR42_RS36040	0.83	+0.8
3,537,540	+		RR42_RS36040	0.83	+0.3
3,537,540	+		RR42_RS36040	0.83	+0.7
3,537,541	-		RR42_RS36040	0.83	+0.0
3,537,655	+		RR42_RS36040	0.88	+0.8
3,537,694	+				-0.6
3,537,697	+				-1.5
3,537,697	+				+0.3
3,537,698	-				-1.2
3,537,698	-				-0.2
3,537,835	+				-1.8
3,537,835	+				-0.4
3,537,851	-				-0.5
3,537,913	+				-1.0
3,538,387	-		RR42_RS36045	0.41	+0.8
3,538,425	+		RR42_RS36045	0.46	+2.2
3,538,426	-		RR42_RS36045	0.46	+0.4
3,538,494	+		RR42_RS36045	0.55	-1.7
3,538,494	+		RR42_RS36045	0.55	+0.7
3,538,551	+		RR42_RS36045	0.62	+0.5
3,538,552	-		RR42_RS36045	0.62	-0.4
3,538,552	-		RR42_RS36045	0.62	-0.3
3,538,571	-		RR42_RS36045	0.65	-0.3
3,538,571	-		RR42_RS36045	0.65	-0.2
3,538,599	+		RR42_RS36045	0.68	+0.1
3,538,600	-		RR42_RS36045	0.68	-0.3
3,538,602	+		RR42_RS36045	0.68	-0.4
3,538,647	+		RR42_RS36045	0.74	-2.2
3,538,667	-		RR42_RS36045	0.77	-1.7
3,538,793	+				+1.0
3,538,917	+		RR42_RS36050	0.47	+0.5