Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36035

Experiment: R2A with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.005 mg/ml
3,532,222	-		RR42_RS36030	0.55	-0.0
3,532,335	+		RR42_RS36030	0.62	-0.4
3,532,336	-		RR42_RS36030	0.62	-1.1
3,532,337	+		RR42_RS36030	0.62	+1.2
3,532,407	+		RR42_RS36030	0.66	-0.2
3,532,408	-		RR42_RS36030	0.66	+0.5
3,532,455	+		RR42_RS36030	0.69	-0.3
3,532,455	+		RR42_RS36030	0.69	-0.6
3,532,724	+		RR42_RS36030	0.85	+1.0
3,532,725	-		RR42_RS36030	0.85	-0.1
3,532,761	+		RR42_RS36030	0.87	-0.4
3,532,761	+		RR42_RS36030	0.87	+0.1
3,532,762	-		RR42_RS36030	0.87	-0.2
3,532,789	-		RR42_RS36030	0.89	+1.1
3,532,864	-				+0.5
3,532,950	+				-0.2
3,532,950	+				+0.1
3,532,951	-				-0.4
3,532,951	-				+0.7
3,532,957	-				+2.4
3,532,957	-				+0.4
3,532,968	+				-1.6
3,532,968	+				-1.1
3,532,969	-				+0.4
3,533,021	+				-1.7
3,533,021	+				-0.2
3,533,021	+				-0.1
3,533,021	+				+0.4
3,533,021	+				-0.2
3,533,021	+				-0.3
3,533,022	-				-0.1
3,533,022	-				+0.2
3,533,387	-				-0.8
3,533,537	+		RR42_RS36035	0.17	+1.0
3,533,537	+		RR42_RS36035	0.17	+0.1
3,533,649	-		RR42_RS36035	0.21	+1.7
3,533,750	+				+1.7
3,533,750	+		RR42_RS36035	0.26	+0.2
3,533,750	+		RR42_RS36035	0.26	+0.3
3,533,751	-		RR42_RS36035	0.26	-0.0
3,533,751	-		RR42_RS36035	0.26	+0.2
3,533,927	+		RR42_RS36035	0.34	-0.3
3,533,928	-		RR42_RS36035	0.34	-0.2
3,533,928	-		RR42_RS36035	0.34	+0.5
3,533,928	-		RR42_RS36035	0.34	-0.3
3,533,930	+		RR42_RS36035	0.34	-0.4
3,533,930	+		RR42_RS36035	0.34	-0.2
3,533,930	+		RR42_RS36035	0.34	+0.3
3,533,931	-		RR42_RS36035	0.34	+0.9
3,533,931	-		RR42_RS36035	0.34	-1.1
3,534,065	+		RR42_RS36035	0.40	-0.4
3,534,065	+		RR42_RS36035	0.40	+0.8
3,534,065	+		RR42_RS36035	0.40	-0.2
3,534,065	+		RR42_RS36035	0.40	-1.5
3,534,066	-		RR42_RS36035	0.40	+0.4
3,534,066	-		RR42_RS36035	0.40	+0.1
3,534,066	-		RR42_RS36035	0.40	-0.3
3,534,068	+		RR42_RS36035	0.40	+1.4
3,534,068	+		RR42_RS36035	0.40	-1.2
3,534,069	-		RR42_RS36035	0.40	+0.4
3,534,069	-		RR42_RS36035	0.40	-0.4
3,534,194	+		RR42_RS36035	0.45	+0.2
3,534,195	-		RR42_RS36035	0.45	+0.0
3,534,195	-		RR42_RS36035	0.45	+0.2
3,534,236	+		RR42_RS36035	0.47	+0.1
3,534,236	+		RR42_RS36035	0.47	-1.7
3,534,236	+		RR42_RS36035	0.47	+2.1
3,534,236	+		RR42_RS36035	0.47	-0.1
3,534,237	-		RR42_RS36035	0.47	+0.2
3,534,237	-		RR42_RS36035	0.47	+0.4
3,534,237	-		RR42_RS36035	0.47	+0.7
3,534,239	+		RR42_RS36035	0.47	+0.3
3,534,239	+		RR42_RS36035	0.47	+1.3
3,534,240	-		RR42_RS36035	0.47	+0.3
3,534,240	-		RR42_RS36035	0.47	+1.2
3,534,347	+		RR42_RS36035	0.52	-0.1
3,534,348	-		RR42_RS36035	0.52	-0.7
3,534,470	+		RR42_RS36035	0.57	-0.7
3,534,471	-		RR42_RS36035	0.57	-0.0
3,534,518	+		RR42_RS36035	0.59	-0.4
3,534,518	+		RR42_RS36035	0.59	-0.3
3,534,519	-		RR42_RS36035	0.59	-0.0
3,534,519	-		RR42_RS36035	0.59	+0.2
3,534,557	+		RR42_RS36035	0.61	-0.3
3,534,558	-		RR42_RS36035	0.61	+0.3
3,534,624	-		RR42_RS36035	0.64	+1.4
3,534,683	-		RR42_RS36035	0.67	-0.2
3,534,708	-		RR42_RS36035	0.68	-0.5
3,534,725	+		RR42_RS36035	0.68	+0.4
3,534,752	+		RR42_RS36035	0.70	+0.2
3,534,752	+		RR42_RS36035	0.70	+2.4
3,534,752	+		RR42_RS36035	0.70	+1.4
3,534,753	-		RR42_RS36035	0.70	-0.5
3,534,753	-		RR42_RS36035	0.70	+0.1
3,534,753	-		RR42_RS36035	0.70	+0.1
3,534,761	+		RR42_RS36035	0.70	-0.5
3,535,180	+		RR42_RS36035	0.88	-0.6
3,535,181	-		RR42_RS36035	0.88	+0.3
3,535,184	+		RR42_RS36035	0.88	+0.3
3,535,184	+		RR42_RS36035	0.88	+0.3
3,535,184	+		RR42_RS36035	0.88	-0.6
3,535,184	+		RR42_RS36035	0.88	+0.0
3,535,185	-		RR42_RS36035	0.89	-1.7
3,535,223	+				+0.8
3,535,223	+				+0.1
3,535,224	-				-0.9
3,535,224	-				+0.0
3,535,226	+				+0.0
3,535,226	+				+0.1
3,535,226	+				-0.4
3,535,226	+				-0.2
3,535,227	-				-1.4
3,535,304	+				+0.4
3,535,364	+				+0.3
3,535,365	-				-0.9
3,535,367	+				-0.7
3,535,367	+				-0.7
3,535,368	-				-1.0
3,535,368	-				-0.5
3,535,368	-				+1.0
3,535,368	-				-0.2
3,535,368	-				-0.3
3,535,391	+				-1.0
3,535,392	-				-0.0
3,535,500	+				+0.4
3,535,500	+				+0.1
3,535,500	+				+0.5
3,535,500	+				-0.3
3,535,500	+				-0.9
3,535,500	+				-0.7
3,535,500	+				+0.4
3,535,500	+				-0.9
3,535,501	-				+0.4
3,535,501	-				+0.8
3,535,501	-				+0.7
3,535,501	-				+0.2
3,535,501	-				+0.2
3,535,501	-				+0.1
3,535,543	+				-0.6
3,535,556	+				+0.4
3,535,556	+				+1.0
3,535,556	+				-0.5
3,535,556	+				-0.2
3,535,556	+				-1.6
3,535,556	+				-0.3
3,535,556	+				-0.9
3,535,557	-				-0.3
3,535,557	-				+1.7
3,535,557	-				+0.8
3,535,557	-				+0.6
3,535,557	-				+0.8
3,535,557	-				+0.1
3,535,557	-				-2.9
3,535,557	-				+0.7
3,535,557	-				-1.1
3,535,557	-				+0.3
3,535,557	-				+1.0
3,535,557	-				-0.9
3,535,575	-				-0.1
3,536,009	-		RR42_RS36040	0.16	-0.8
3,536,290	+		RR42_RS36040	0.29	-0.7
3,536,291	-		RR42_RS36040	0.29	-1.8
3,536,398	+		RR42_RS36040	0.33	+0.5
3,536,398	+		RR42_RS36040	0.33	+0.1
3,536,399	-		RR42_RS36040	0.34	+1.4
3,536,401	+		RR42_RS36040	0.34	+0.2
3,536,402	-		RR42_RS36040	0.34	+0.5
3,536,402	-		RR42_RS36040	0.34	+0.3
3,536,402	-		RR42_RS36040	0.34	+0.6
3,536,443	+		RR42_RS36040	0.35	+0.8