Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35505

Experiment: R2A with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.005 mg/ml
3,415,904	+				-0.1
3,415,905	-				-0.7
3,415,976	+		RR42_RS35500	0.13	+0.7
3,415,995	+		RR42_RS35500	0.15	-0.7
3,415,996	-		RR42_RS35500	0.15	-1.4
3,416,332	+		RR42_RS35500	0.50	+0.3
3,416,405	+		RR42_RS35500	0.58	+1.4
3,416,405	+		RR42_RS35500	0.58	+0.7
3,416,406	-		RR42_RS35500	0.58	+1.4
3,416,475	+		RR42_RS35500	0.66	+0.6
3,416,475	+		RR42_RS35500	0.66	+0.7
3,416,476	-		RR42_RS35500	0.66	+0.2
3,416,476	-		RR42_RS35500	0.66	+0.3
3,416,590	-		RR42_RS35500	0.78	-1.3
3,416,590	-		RR42_RS35500	0.78	+0.5
3,416,889	+				-0.9
3,416,889	+				-0.3
3,417,064	+				+0.0
3,417,178	+		RR42_RS35505	0.12	+0.2
3,417,178	+		RR42_RS35505	0.12	+0.1
3,417,292	+		RR42_RS35505	0.16	+0.0
3,417,293	-		RR42_RS35505	0.16	-0.6
3,417,339	+		RR42_RS35505	0.17	-0.2
3,417,339	+		RR42_RS35505	0.17	+1.2
3,417,340	-		RR42_RS35505	0.17	+0.7
3,417,340	-		RR42_RS35505	0.17	-0.2
3,417,340	-		RR42_RS35505	0.17	-0.2
3,417,361	-		RR42_RS35505	0.18	-1.5
3,417,595	+		RR42_RS35505	0.25	-0.1
3,417,595	+		RR42_RS35505	0.25	+1.0
3,417,595	+		RR42_RS35505	0.25	+1.2
3,417,596	-		RR42_RS35505	0.25	-1.4
3,417,728	-		RR42_RS35505	0.30	+0.8
3,417,728	-		RR42_RS35505	0.30	-0.2
3,417,880	+		RR42_RS35505	0.35	-0.2
3,417,880	+		RR42_RS35505	0.35	+0.3
3,417,940	+		RR42_RS35505	0.37	+0.1
3,417,941	-		RR42_RS35505	0.37	+0.1
3,418,044	+		RR42_RS35505	0.40	-0.8
3,418,072	+		RR42_RS35505	0.41	-0.4
3,418,072	+		RR42_RS35505	0.41	+0.1
3,418,073	-		RR42_RS35505	0.41	+1.2
3,418,138	+		RR42_RS35505	0.43	-0.4
3,418,138	+		RR42_RS35505	0.43	-0.8
3,418,138	+		RR42_RS35505	0.43	+0.3
3,418,138	+		RR42_RS35505	0.43	+0.6
3,418,139	-		RR42_RS35505	0.43	-0.3
3,418,140	+		RR42_RS35505	0.43	+0.1
3,418,140	+		RR42_RS35505	0.43	-0.7
3,418,141	-		RR42_RS35505	0.43	+0.5
3,418,141	-		RR42_RS35505	0.43	+0.0
3,418,141	-		RR42_RS35505	0.43	+1.4
3,418,143	-		RR42_RS35505	0.43	+0.2
3,418,151	+		RR42_RS35505	0.43	+0.6
3,418,152	-		RR42_RS35505	0.43	+0.3
3,418,152	-		RR42_RS35505	0.43	-0.4
3,418,230	+		RR42_RS35505	0.46	-0.4
3,418,231	-		RR42_RS35505	0.46	-0.1
3,418,231	-		RR42_RS35505	0.46	-0.1
3,418,231	-		RR42_RS35505	0.46	-0.9
3,418,232	+		RR42_RS35505	0.46	-0.3
3,418,232	+		RR42_RS35505	0.46	-0.4
3,418,232	+		RR42_RS35505	0.46	+0.0
3,418,233	-		RR42_RS35505	0.46	+1.1
3,418,233	-		RR42_RS35505	0.46	-0.0
3,418,255	+		RR42_RS35505	0.47	-0.6
3,418,256	-		RR42_RS35505	0.47	-0.4
3,418,573	+		RR42_RS35505	0.57	+0.3
3,418,574	-		RR42_RS35505	0.57	+0.3
3,418,591	+		RR42_RS35505	0.57	-2.2
3,418,592	-		RR42_RS35505	0.57	-0.3
3,418,593	-		RR42_RS35505	0.58	+0.7
3,418,654	-		RR42_RS35505	0.59	-0.5
3,418,655	+		RR42_RS35505	0.60	-0.8
3,418,655	+		RR42_RS35505	0.60	+2.2
3,418,656	-		RR42_RS35505	0.60	-2.2
3,418,951	+		RR42_RS35505	0.69	+0.8
3,419,174	-		RR42_RS35505	0.76	+0.3
3,419,211	+		RR42_RS35505	0.77	-0.3
3,419,340	+		RR42_RS35505	0.82	+0.8
3,419,341	-		RR42_RS35505	0.82	+0.6
3,419,343	+		RR42_RS35505	0.82	+0.4
3,419,404	-		RR42_RS35505	0.84	-0.1
3,419,404	-		RR42_RS35505	0.84	-0.1
3,419,442	+		RR42_RS35505	0.85	+0.2
3,419,705	+				+0.7
3,419,705	+				+0.2
3,419,706	-				-1.1
3,419,830	+				+0.9
3,419,845	+				-0.4
3,419,845	+				-0.2
3,419,846	-				+0.2
3,419,846	-				+1.0
3,419,852	+				-0.1
3,419,853	-				-0.3
3,419,956	-				+1.9
3,419,997	+				-0.1
3,420,008	+				+0.5
3,420,009	-				-1.2
3,420,009	-				-0.8
3,420,009	-				+0.1
3,420,012	+				+0.3
3,420,013	-				+1.5
3,420,013	-				-0.2
3,420,105	+				-0.2
3,420,203	+				+0.3
3,420,203	+				+2.0
3,420,407	+		RR42_RS35510	0.15	+0.8
3,420,408	-		RR42_RS35510	0.15	+0.9
3,420,408	-		RR42_RS35510	0.15	-0.8
3,420,459	+		RR42_RS35510	0.20	+2.8
3,420,460	-		RR42_RS35510	0.20	-1.4
3,420,460	-		RR42_RS35510	0.20	-0.8
3,420,465	+		RR42_RS35510	0.21	-0.2
3,420,465	+		RR42_RS35510	0.21	-0.7
3,420,466	-		RR42_RS35510	0.21	-0.4
3,420,585	-		RR42_RS35510	0.32	+1.2
3,420,597	+		RR42_RS35510	0.33	+0.4
3,420,598	-		RR42_RS35510	0.33	-1.5
3,420,598	-		RR42_RS35510	0.33	+0.6
3,420,669	+		RR42_RS35510	0.40	-0.0
3,420,716	+		RR42_RS35510	0.44	-0.5
3,420,794	+		RR42_RS35510	0.51	-0.1
3,420,799	-		RR42_RS35510	0.52	-0.3
3,420,825	+		RR42_RS35510	0.54	+0.4
3,420,825	+		RR42_RS35510	0.54	+0.7
3,420,826	-		RR42_RS35510	0.54	-0.4
3,420,910	-		RR42_RS35510	0.62	-0.9