Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35105

Experiment: R2A with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.005 mg/ml
3,327,339	-				+0.2
3,327,385	+				-0.5
3,327,386	-				-0.7
3,327,386	-				+0.7
3,327,386	-				+0.3
3,327,386	-				+0.3
3,327,407	+				+0.6
3,327,407	+				+0.1
3,327,407	+				-1.3
3,327,408	-				+1.3
3,327,408	-				-0.6
3,327,553	+				-0.8
3,327,931	+		RR42_RS35100	0.62	-0.1
3,327,932	-		RR42_RS35100	0.62	-1.3
3,327,966	+		RR42_RS35100	0.68	-0.4
3,327,966	+		RR42_RS35100	0.68	+1.5
3,327,978	+		RR42_RS35100	0.70	+1.0
3,327,978	+		RR42_RS35100	0.70	+0.6
3,327,978	+		RR42_RS35100	0.70	+0.4
3,328,018	+		RR42_RS35100	0.77	+0.2
3,328,019	-		RR42_RS35100	0.77	+0.9
3,328,019	-		RR42_RS35100	0.77	+1.0
3,328,019	-		RR42_RS35100	0.77	+0.4
3,328,369	+				+0.8
3,328,370	-				+0.1
3,328,370	-				+0.1
3,328,370	-				+0.5
3,328,370	-				-0.0
3,328,599	-		RR42_RS35105	0.25	+0.1
3,328,599	-		RR42_RS35105	0.25	-2.0
3,328,599	-		RR42_RS35105	0.25	+0.1
3,328,632	+		RR42_RS35105	0.28	+0.1
3,328,633	-		RR42_RS35105	0.28	-0.2
3,328,745	-		RR42_RS35105	0.38	+0.1
3,328,745	-		RR42_RS35105	0.38	-1.5
3,328,745	-		RR42_RS35105	0.38	+0.1
3,328,962	+		RR42_RS35105	0.58	-1.8
3,328,963	-		RR42_RS35105	0.58	-0.2
3,329,101	+		RR42_RS35105	0.71	+1.4
3,329,421	+				+0.1
3,329,515	+				-0.5
3,329,515	+				-0.7
3,329,515	+				+0.3
3,329,515	+				+0.4
3,329,516	-				+1.2
3,329,516	-				-0.1
3,329,516	-				+0.2
3,329,606	+		RR42_RS35110	0.54	+0.2
3,329,606	+				+0.1
3,329,607	-		RR42_RS35110	0.55	+1.3
3,329,689	+				+0.3
3,329,690	-				-0.5
3,330,094	+		RR42_RS35115	0.54	+0.5
3,330,094	+		RR42_RS35115	0.54	+0.2
3,330,095	-		RR42_RS35115	0.54	+0.2
3,330,370	-				+0.6