Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS34915

Experiment: R2A with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.005 mg/ml
3,283,347	+		RR42_RS34905	0.85	+0.4
3,283,348	-		RR42_RS34905	0.85	-0.4
3,283,348	-		RR42_RS34905	0.85	+0.4
3,283,466	-				+0.4
3,283,580	+		RR42_RS34910	0.17	-0.9
3,283,580	+		RR42_RS34910	0.17	-1.2
3,283,581	-		RR42_RS34910	0.17	-0.8
3,283,581	-		RR42_RS34910	0.17	+0.4
3,283,581	-		RR42_RS34910	0.17	+0.0
3,283,594	+		RR42_RS34910	0.19	-0.8
3,283,616	+		RR42_RS34910	0.23	-0.6
3,283,892	+		RR42_RS34910	0.68	-0.2
3,283,892	+		RR42_RS34910	0.68	-0.2
3,283,893	-		RR42_RS34910	0.68	-2.0
3,283,893	-		RR42_RS34910	0.68	+0.5
3,283,910	+		RR42_RS34910	0.71	-0.8
3,283,913	+		RR42_RS34910	0.72	+0.0
3,283,913	+		RR42_RS34910	0.72	+1.1
3,283,913	+		RR42_RS34910	0.72	+0.3
3,283,914	-		RR42_RS34910	0.72	-1.9
3,284,149	+				+0.0
3,284,150	-				+1.3
3,284,150	-				-0.3
3,284,150	-				-0.3
3,284,150	-				+0.3
3,284,150	-				-0.0
3,284,153	+				+2.0
3,284,154	-				+0.4
3,284,333	+		RR42_RS34915	0.16	-0.7
3,284,369	-		RR42_RS34915	0.19	-0.1
3,284,369	-		RR42_RS34915	0.19	+1.4
3,284,379	-		RR42_RS34915	0.19	-0.7
3,284,621	-		RR42_RS34915	0.40	-0.5
3,284,722	+		RR42_RS34915	0.48	+1.3
3,284,722	+		RR42_RS34915	0.48	-0.4
3,284,738	+		RR42_RS34915	0.50	-0.5
3,284,944	+		RR42_RS34915	0.67	-1.7
3,284,962	+		RR42_RS34915	0.69	-0.3
3,284,962	+		RR42_RS34915	0.69	-1.0
3,284,963	-		RR42_RS34915	0.69	-0.8
3,284,963	-		RR42_RS34915	0.69	-1.1
3,285,422	-				-1.7
3,285,423	+				-0.4
3,285,438	+				-2.0
3,285,439	-				-0.2
3,285,444	-				+0.2
3,285,504	+				-0.9
3,285,504	+				+0.7
3,285,504	+				-1.3
3,285,505	-				-1.4
3,285,660	+		RR42_RS34920	0.18	+0.4
3,285,660	+		RR42_RS34920	0.18	-0.6
3,285,660	+		RR42_RS34920	0.18	-0.4
3,285,660	+		RR42_RS34920	0.18	+0.1
3,285,661	-		RR42_RS34920	0.18	-0.3
3,285,661	-		RR42_RS34920	0.18	-0.0
3,285,661	-		RR42_RS34920	0.18	-0.1
3,285,661	-		RR42_RS34920	0.18	+0.1
3,285,661	-		RR42_RS34920	0.18	+1.5
3,285,847	-		RR42_RS34920	0.41	+0.1
3,285,847	-		RR42_RS34920	0.41	+0.1
3,285,847	-		RR42_RS34920	0.41	-0.2
3,285,886	-		RR42_RS34920	0.46	+0.2
3,286,066	-		RR42_RS34920	0.69	-0.4