Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS33820

Experiment: R2A with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.005 mg/ml
3,015,546	+				+1.6
3,015,571	+				+0.2
3,015,572	-				-1.0
3,015,572	-				-1.0
3,015,579	+		RR42_RS33810	0.11	-2.1
3,015,580	-		RR42_RS33810	0.11	+1.0
3,015,580	-		RR42_RS33810	0.11	-1.4
3,015,658	-		RR42_RS33810	0.37	-0.4
3,015,658	-		RR42_RS33810	0.37	-2.8
3,015,666	+		RR42_RS33810	0.40	+0.8
3,015,735	+		RR42_RS33810	0.62	+1.5
3,015,736	-		RR42_RS33810	0.62	-0.5
3,015,736	-		RR42_RS33810	0.62	-1.4
3,015,736	-		RR42_RS33810	0.62	-1.1
3,015,736	-		RR42_RS33810	0.62	+0.7
3,015,826	+				-0.5
3,015,828	+				-0.9
3,015,828	+				-0.4
3,015,829	-				+0.4
3,015,829	-				+0.1
3,015,829	-				-1.2
3,015,829	-				-0.0
3,015,837	+				+0.7
3,016,193	+		RR42_RS33815	0.52	-0.5
3,016,431	+				-0.2
3,016,432	-				+0.3
3,016,432	-				+0.8
3,016,432	-				-1.2
3,016,432	-				+0.2
3,016,432	-				-1.0
3,016,432	-				-0.2
3,016,503	+				-0.7
3,016,504	-				-1.5
3,017,070	+		RR42_RS33820	0.44	-1.2
3,017,070	+		RR42_RS33820	0.44	+0.1
3,017,071	-		RR42_RS33820	0.44	-1.0
3,017,071	-		RR42_RS33820	0.44	+0.6
3,017,071	-		RR42_RS33820	0.44	-0.6
3,017,072	+		RR42_RS33820	0.44	-0.1
3,017,072	+		RR42_RS33820	0.44	-1.3
3,017,072	+		RR42_RS33820	0.44	-1.3
3,017,072	+		RR42_RS33820	0.44	+1.6
3,017,072	+		RR42_RS33820	0.44	-0.6
3,017,073	-		RR42_RS33820	0.44	+0.2
3,017,099	+		RR42_RS33820	0.47	-1.3
3,017,099	+		RR42_RS33820	0.47	+0.4
3,017,465	+		RR42_RS33820	0.77	-0.3
3,017,466	-		RR42_RS33820	0.77	-0.3
3,017,721	-				-0.3
3,017,736	+				-0.6
3,017,736	+				-0.0
3,017,737	-				-0.8
3,017,756	-				+0.7
3,017,826	+				-0.6
3,017,826	+				-0.7
3,017,827	-				+0.9
3,017,852	-				+0.4
3,017,876	-				-0.7
3,017,876	-				+1.5
3,018,102	+		RR42_RS33825	0.23	-0.0
3,018,103	-		RR42_RS33825	0.23	-2.3
3,018,415	-		RR42_RS33825	0.58	-0.6
3,018,415	-		RR42_RS33825	0.58	-1.0
3,018,717	+				-0.6