Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS33105

Experiment: R2A with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.005 mg/ml
2,833,754	+				-0.2
2,833,771	-				+0.7
2,833,771	-				-0.5
2,833,800	-				+0.3
2,833,911	-		RR42_RS33100	0.19	+0.6
2,833,911	-		RR42_RS33100	0.19	-0.7
2,833,930	-		RR42_RS33100	0.21	-1.1
2,834,128	+		RR42_RS33100	0.44	+1.0
2,834,128	+		RR42_RS33100	0.44	+0.5
2,834,128	+		RR42_RS33100	0.44	+1.1
2,834,129	-		RR42_RS33100	0.44	-0.4
2,834,129	-		RR42_RS33100	0.44	+0.1
2,834,129	-		RR42_RS33100	0.44	-0.4
2,834,129	-		RR42_RS33100	0.44	-0.2
2,834,129	-		RR42_RS33100	0.44	-0.4
2,834,129	-		RR42_RS33100	0.44	+0.2
2,834,147	+		RR42_RS33100	0.46	-1.3
2,834,147	+		RR42_RS33100	0.46	-0.2
2,834,147	+		RR42_RS33100	0.46	-4.4
2,834,148	-		RR42_RS33100	0.46	-0.2
2,834,367	+		RR42_RS33100	0.72	-0.1
2,834,493	-		RR42_RS33100	0.86	+0.5
2,834,504	+		RR42_RS33100	0.88	+0.3
2,834,505	-		RR42_RS33100	0.88	-0.3
2,834,567	-				+0.2
2,834,628	+				-0.6
2,834,693	-				-0.1
2,834,867	+				-0.4
2,834,867	+				-0.2
2,834,867	+				+0.2
2,834,867	+				+0.5
2,834,868	-				+0.6
2,834,868	-				+2.5
2,834,868	-				-1.0
2,835,089	+		RR42_RS33105	0.27	-0.8
2,835,089	+		RR42_RS33105	0.27	+0.1
2,835,090	-		RR42_RS33105	0.27	+0.5
2,835,119	+		RR42_RS33105	0.29	+0.4
2,835,119	+		RR42_RS33105	0.29	-0.6
2,835,119	+		RR42_RS33105	0.29	-0.5
2,835,120	-		RR42_RS33105	0.29	-0.4
2,835,120	-		RR42_RS33105	0.29	+1.7
2,835,272	+		RR42_RS33105	0.41	-0.0
2,835,272	+		RR42_RS33105	0.41	+0.0
2,835,273	-		RR42_RS33105	0.41	+0.1
2,835,273	-		RR42_RS33105	0.41	+0.3
2,835,273	-		RR42_RS33105	0.41	-0.1
2,835,332	+		RR42_RS33105	0.46	+0.3
2,835,332	+		RR42_RS33105	0.46	-0.9
2,835,332	+		RR42_RS33105	0.46	-1.9
2,835,333	-		RR42_RS33105	0.46	+1.0
2,835,333	-		RR42_RS33105	0.46	+0.4
2,835,333	-		RR42_RS33105	0.46	+0.9
2,835,335	+		RR42_RS33105	0.46	-0.0
2,835,335	+		RR42_RS33105	0.46	-0.2
2,835,335	+		RR42_RS33105	0.46	+0.2
2,835,376	+		RR42_RS33105	0.49	-0.4
2,835,378	-		RR42_RS33105	0.49	+0.6
2,835,521	+		RR42_RS33105	0.61	+0.6
2,835,656	+		RR42_RS33105	0.71	+0.3
2,835,657	-		RR42_RS33105	0.71	-0.5
2,835,870	+		RR42_RS33105	0.88	-0.2
2,835,870	+		RR42_RS33105	0.88	+1.2
2,835,929	+				+0.2
2,835,929	+				-1.6
2,835,929	+				+0.8
2,835,929	+				+1.1
2,835,930	-				+0.7
2,835,930	-				-0.3
2,835,930	-				-1.8
2,835,930	-				-0.8
2,835,977	+				+0.1
2,835,978	-				-0.3
2,835,978	-				+1.0
2,836,279	-				-0.3
2,836,279	-				-1.1
2,836,383	+		RR42_RS33110	0.37	+0.4
2,836,389	+		RR42_RS33110	0.39	+0.1
2,836,389	+		RR42_RS33110	0.39	-0.4
2,836,390	-		RR42_RS33110	0.39	-0.5
2,836,390	-		RR42_RS33110	0.39	+0.5
2,836,390	-		RR42_RS33110	0.39	+0.8
2,836,390	-		RR42_RS33110	0.39	+1.5
2,836,390	-		RR42_RS33110	0.39	-0.5
2,836,390	-		RR42_RS33110	0.39	+0.2
2,836,461	+		RR42_RS33110	0.64	+0.0
2,836,541	+				-0.8
2,836,541	+				-0.1
2,836,541	+				-0.6
2,836,542	-				+0.7
2,836,542	-				-0.9
2,836,542	-				+0.3
2,836,542	-				+1.1
2,836,797	+		RR42_RS33115	0.22	+1.3
2,836,797	+		RR42_RS33115	0.22	-0.8
2,836,798	-		RR42_RS33115	0.22	-1.1