Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29970

Experiment: R2A with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.005 mg/ml
2,089,498	+		RR42_RS29965	0.15	-0.1
2,089,498	+		RR42_RS29965	0.15	-0.8
2,089,556	-		RR42_RS29965	0.21	-1.4
2,089,586	+		RR42_RS29965	0.24	-0.6
2,089,587	-		RR42_RS29965	0.24	-1.5
2,089,684	+		RR42_RS29965	0.34	-0.2
2,089,684	+		RR42_RS29965	0.34	+0.0
2,089,727	-		RR42_RS29965	0.38	+0.1
2,089,727	-		RR42_RS29965	0.38	-0.1
2,089,727	-		RR42_RS29965	0.38	-0.0
2,089,859	+		RR42_RS29965	0.52	-1.0
2,090,014	-		RR42_RS29965	0.67	+0.2
2,090,034	+		RR42_RS29965	0.69	-0.8
2,090,034	+		RR42_RS29965	0.69	-1.8
2,090,034	+		RR42_RS29965	0.69	+0.6
2,090,034	+		RR42_RS29965	0.69	-1.0
2,090,043	+		RR42_RS29965	0.70	-0.8
2,090,043	+		RR42_RS29965	0.70	+0.6
2,090,043	+		RR42_RS29965	0.70	-2.5
2,090,044	-		RR42_RS29965	0.70	-0.6
2,090,052	+		RR42_RS29965	0.71	-0.1
2,090,052	+		RR42_RS29965	0.71	+0.9
2,090,063	+		RR42_RS29965	0.72	-1.1
2,090,063	+		RR42_RS29965	0.72	-0.4
2,090,063	+		RR42_RS29965	0.72	-1.4
2,090,063	+		RR42_RS29965	0.72	-0.4
2,090,063	+		RR42_RS29965	0.72	+0.0
2,090,064	-		RR42_RS29965	0.72	-0.2
2,090,090	+		RR42_RS29965	0.75	+0.0
2,090,090	+		RR42_RS29965	0.75	-0.5
2,090,090	+		RR42_RS29965	0.75	+2.7
2,090,090	+		RR42_RS29965	0.75	-1.0
2,090,091	-		RR42_RS29965	0.75	-0.2
2,090,091	-		RR42_RS29965	0.75	+1.0
2,090,091	-		RR42_RS29965	0.75	+0.3
2,090,091	-		RR42_RS29965	0.75	+1.2
2,090,178	+		RR42_RS29965	0.84	+0.6
2,090,178	+		RR42_RS29965	0.84	-1.4
2,090,178	+		RR42_RS29965	0.84	-0.5
2,090,179	-		RR42_RS29965	0.84	-0.9
2,090,311	-				-0.2
2,090,321	-				+0.4
2,090,437	+				-1.9
2,090,437	+				+1.0
2,090,437	+				+1.3
2,090,437	+				+0.7
2,090,438	-				+0.3
2,090,438	-				-1.4
2,090,438	-				-0.2
2,090,438	-				-2.4
2,090,438	-				-0.7
2,090,438	-				-1.7
2,090,438	-				-2.4
2,090,440	+				+0.0
2,090,440	+				-0.4
2,090,440	+				+0.2
2,090,440	+				+0.2
2,090,440	+				+0.9
2,090,440	+				-0.0
2,090,440	+				-0.7
2,090,440	+				-0.7
2,090,440	+				+0.3
2,090,440	+				-0.1
2,090,441	-				-0.7
2,090,441	-				-0.8
2,090,441	-				-1.9
2,090,441	-				-0.5
2,090,441	-				+1.2
2,090,441	-				-1.2
2,090,441	-				-1.6
2,090,441	-				-1.9
2,090,497	+		RR42_RS29970	0.10	+0.7
2,090,497	+		RR42_RS29970	0.10	-0.0
2,090,497	+		RR42_RS29970	0.10	-2.4
2,090,497	+		RR42_RS29970	0.10	+0.7
2,090,497	+		RR42_RS29970	0.10	-0.6
2,090,497	+		RR42_RS29970	0.10	-0.3
2,090,497	+		RR42_RS29970	0.10	-0.2
2,090,497	+		RR42_RS29970	0.10	+0.6
2,090,497	+		RR42_RS29970	0.10	-2.0
2,090,497	+		RR42_RS29970	0.10	-0.6
2,090,497	+		RR42_RS29970	0.10	+0.4
2,090,497	+		RR42_RS29970	0.10	-0.1
2,090,498	-		RR42_RS29970	0.11	+1.2
2,090,523	+		RR42_RS29970	0.15	-1.5
2,090,523	+		RR42_RS29970	0.15	+0.1
2,090,523	+		RR42_RS29970	0.15	+0.3
2,090,556	+		RR42_RS29970	0.20	+0.8
2,090,579	+		RR42_RS29970	0.23	+0.1
2,090,579	+		RR42_RS29970	0.23	+0.3
2,090,706	-		RR42_RS29970	0.43	-1.0
2,090,755	+		RR42_RS29970	0.50	+1.3
2,090,837	-		RR42_RS29970	0.63	-1.3
2,090,837	-		RR42_RS29970	0.63	-0.3
2,091,211	+				-0.5
2,091,212	-				-0.3
2,091,212	-				+0.0
2,091,301	+				-0.1
2,091,301	+				+0.4
2,091,301	+				-0.2
2,091,302	-				+0.7
2,091,302	-				-0.5
2,091,302	-				-0.4
2,091,302	-				-0.4
2,091,327	+				+0.1
2,091,333	-				+0.3
2,091,333	-				-0.3
2,091,400	+				-0.8
2,091,400	+				-0.2
2,091,473	-				+0.0
2,091,476	-				-2.1
2,091,476	-				+1.0
2,091,511	+				-0.0
2,091,511	+				-0.7
2,091,529	+				-0.3
2,091,530	-				+0.3
2,091,532	+				-2.2
2,091,533	-				-0.8
2,091,568	+				+0.0
2,091,568	+				+1.8
2,091,568	+				+0.2
2,091,569	-				-0.3
2,091,569	-				+0.1
2,091,610	+				-0.8
2,091,683	+				-0.4
2,091,683	+				+0.7
2,091,694	+				-0.3
2,091,698	+				-0.8
2,091,702	+				-0.5
2,091,703	-				-0.7
2,091,807	+				-0.0
2,091,808	-				+0.2
2,091,808	-				+0.1
2,091,808	-				+0.7
2,091,837	-				-1.3
2,091,843	+				-1.2
2,091,843	+				-0.5
2,091,844	-				-0.2
2,091,864	-				-1.9
2,091,954	+				+0.2
2,091,955	-				-0.4
2,091,992	+				-0.5
2,091,993	-				-0.2
2,091,993	-				-2.2
2,091,993	-				+1.1
2,092,057	+				+0.0
2,092,057	+				-0.9
2,092,057	+				-0.3
2,092,058	-				+0.5