Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29750

Experiment: R2A with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.005 mg/ml
2,042,712	+				-1.1
2,042,773	+				-0.5
2,042,788	+		RR42_RS29745	0.10	-0.7
2,042,792	+		RR42_RS29745	0.11	-0.6
2,042,793	-		RR42_RS29745	0.11	-0.8
2,042,808	+		RR42_RS29745	0.13	-3.5
2,042,808	+		RR42_RS29745	0.13	-2.7
2,042,809	-		RR42_RS29745	0.13	-0.7
2,042,809	-		RR42_RS29745	0.13	-1.0
2,042,809	-		RR42_RS29745	0.13	-0.6
2,042,809	-		RR42_RS29745	0.13	-0.6
2,042,950	+		RR42_RS29745	0.33	+0.7
2,042,950	+		RR42_RS29745	0.33	-1.6
2,042,950	+		RR42_RS29745	0.33	-0.6
2,042,950	+		RR42_RS29745	0.33	-0.3
2,042,950	+		RR42_RS29745	0.33	-1.8
2,042,951	-		RR42_RS29745	0.33	+0.7
2,042,951	-		RR42_RS29745	0.33	-1.2
2,042,951	-		RR42_RS29745	0.33	-0.2
2,042,951	-		RR42_RS29745	0.33	+0.6
2,042,951	-		RR42_RS29745	0.33	-0.4
2,042,951	-		RR42_RS29745	0.33	-0.1
2,043,006	-		RR42_RS29745	0.40	-0.3
2,043,006	-		RR42_RS29745	0.40	-1.1
2,043,051	+		RR42_RS29745	0.46	-1.0
2,043,052	-		RR42_RS29745	0.47	+0.2
2,043,064	+		RR42_RS29745	0.48	+0.5
2,043,065	-		RR42_RS29745	0.48	-2.2
2,043,104	+		RR42_RS29745	0.54	-1.2
2,043,105	-		RR42_RS29745	0.54	+0.5
2,043,121	-		RR42_RS29745	0.56	-0.6
2,043,180	+		RR42_RS29745	0.64	-1.6
2,043,180	+		RR42_RS29745	0.64	-1.2
2,043,213	+		RR42_RS29745	0.69	-0.9
2,043,213	+		RR42_RS29745	0.69	-1.5
2,043,214	-		RR42_RS29745	0.69	-1.8
2,043,263	+		RR42_RS29745	0.76	-2.6
2,043,288	-		RR42_RS29745	0.79	-0.9
2,043,288	-		RR42_RS29745	0.79	+0.2
2,043,303	+		RR42_RS29745	0.81	-0.1
2,043,304	-		RR42_RS29745	0.81	-0.2
2,043,304	-		RR42_RS29745	0.81	+0.6
2,043,304	-		RR42_RS29745	0.81	-0.3
2,043,500	-				-0.4
2,043,501	+				-0.9
2,043,530	+				-0.7
2,043,589	+				-1.3
2,043,604	+				-0.6
2,043,605	-				+0.1
2,043,621	-				-2.7
2,043,706	+				-2.9
2,043,706	+				+1.3
2,043,706	+				-0.3
2,043,707	-				-2.1
2,043,763	+		RR42_RS29750	0.15	-1.3
2,043,763	+		RR42_RS29750	0.15	+0.0
2,043,763	+		RR42_RS29750	0.15	-0.9
2,043,764	-		RR42_RS29750	0.15	-0.8
2,043,876	+		RR42_RS29750	0.45	-0.2
2,043,876	+		RR42_RS29750	0.45	-1.4
2,043,876	+		RR42_RS29750	0.45	-0.9
2,043,936	+		RR42_RS29750	0.61	-1.5
2,043,964	+		RR42_RS29750	0.68	+0.1
2,043,965	-		RR42_RS29750	0.68	+0.2
2,043,965	-		RR42_RS29750	0.68	+2.3
2,044,070	+				-0.7
2,044,070	+				-0.2
2,044,085	+				-1.5
2,044,086	-				-1.5
2,044,088	+				+0.4
2,044,088	+				+0.8
2,044,088	+				-0.7
2,044,088	+				-0.0
2,044,089	-				-1.3
2,044,089	-				-0.3
2,044,089	-				-1.8
2,044,108	+				+1.2
2,044,109	-				-0.5
2,044,109	-				-0.8
2,044,123	-				-0.6
2,044,127	+				+1.7
2,044,127	+				+0.0
2,044,168	+				-1.8
2,044,169	-				-2.0
2,044,169	-				-2.2
2,044,191	+				-1.2
2,044,191	+				-2.6
2,044,192	-				+0.3
2,044,192	-				-0.0
2,044,192	-				+0.1
2,044,197	+				-0.1
2,044,250	+		RR42_RS29755	0.18	-1.3
2,044,251	+		RR42_RS29755	0.18	-0.9
2,044,251	+		RR42_RS29755	0.18	+0.3
2,044,251	+		RR42_RS29755	0.18	-2.2
2,044,251	+		RR42_RS29755	0.18	-1.2
2,044,252	-		RR42_RS29755	0.18	+0.2
2,044,252	-		RR42_RS29755	0.18	-0.3
2,044,256	-		RR42_RS29755	0.19	-1.4
2,044,286	+		RR42_RS29755	0.26	-0.6
2,044,287	-		RR42_RS29755	0.27	-0.8
2,044,299	+		RR42_RS29755	0.30	-0.5
2,044,315	+		RR42_RS29755	0.34	+0.5
2,044,316	-		RR42_RS29755	0.34	-0.9
2,044,381	+		RR42_RS29755	0.50	+0.5
2,044,410	+		RR42_RS29755	0.57	-2.7
2,044,545	+				+1.7
2,044,545	+				+0.6
2,044,546	-				-0.4
2,044,546	-				-0.1
2,044,546	-				+0.4
2,044,581	+				+0.2
2,044,582	-				-0.4
2,044,809	-		RR42_RS29760	0.29	-0.9
2,044,820	+		RR42_RS29760	0.31	-1.4
2,044,821	-		RR42_RS29760	0.31	-0.8
2,044,824	+		RR42_RS29760	0.31	-0.5
2,044,824	+		RR42_RS29760	0.31	+0.8
2,044,825	-		RR42_RS29760	0.31	+0.9
2,044,825	-		RR42_RS29760	0.31	-0.3
2,044,942	-		RR42_RS29760	0.47	-0.7
2,044,942	-		RR42_RS29760	0.47	+0.2
2,044,966	-		RR42_RS29760	0.51	+0.2
2,045,043	+		RR42_RS29760	0.61	+0.8
2,045,052	+		RR42_RS29760	0.62	-0.8
2,045,053	-		RR42_RS29760	0.62	+0.2
2,045,053	-		RR42_RS29760	0.62	-1.3
2,045,053	-		RR42_RS29760	0.62	-1.9
2,045,053	-		RR42_RS29760	0.62	+0.1
2,045,053	-		RR42_RS29760	0.62	-2.7