Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29660

Experiment: R2A with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.005 mg/ml
2,020,748	-		RR42_RS29650	0.88	-1.1
2,020,748	-		RR42_RS29650	0.88	-1.9
2,020,756	-		RR42_RS29650	0.89	-1.1
2,020,801	+				-0.1
2,020,801	+				-1.8
2,020,802	-				-1.8
2,020,802	-				-2.3
2,020,831	+				+0.4
2,020,832	-				+0.9
2,020,845	+				-1.7
2,020,877	-				-1.6
2,020,951	-		RR42_RS29655	0.16	-1.1
2,020,980	+		RR42_RS29655	0.20	-1.9
2,020,980	+		RR42_RS29655	0.20	-2.5
2,020,981	-		RR42_RS29655	0.20	-1.2
2,021,021	-		RR42_RS29655	0.26	-2.2
2,021,021	-		RR42_RS29655	0.26	-1.1
2,021,026	+		RR42_RS29655	0.26	-0.0
2,021,026	+		RR42_RS29655	0.26	-1.5
2,021,026	+		RR42_RS29655	0.26	-0.2
2,021,026	+		RR42_RS29655	0.26	-1.8
2,021,027	-		RR42_RS29655	0.27	+1.8
2,021,027	-		RR42_RS29655	0.27	-1.0
2,021,027	-		RR42_RS29655	0.27	-0.8
2,021,031	-		RR42_RS29655	0.27	+0.4
2,021,031	-		RR42_RS29655	0.27	-0.9
2,021,072	-		RR42_RS29655	0.33	-1.6
2,021,072	-		RR42_RS29655	0.33	-1.9
2,021,140	+		RR42_RS29655	0.42	-1.2
2,021,143	+		RR42_RS29655	0.43	+0.3
2,021,144	-		RR42_RS29655	0.43	-0.8
2,021,144	-		RR42_RS29655	0.43	-0.0
2,021,182	+		RR42_RS29655	0.48	-1.5
2,021,276	-		RR42_RS29655	0.61	-0.7
2,021,323	+		RR42_RS29655	0.68	-1.5
2,021,324	-		RR42_RS29655	0.68	-0.8
2,021,355	+		RR42_RS29655	0.73	-0.9
2,021,355	+		RR42_RS29655	0.73	-1.0
2,021,356	-		RR42_RS29655	0.73	-0.8
2,021,356	-		RR42_RS29655	0.73	-0.6
2,021,356	-		RR42_RS29655	0.73	-0.8
2,021,356	-		RR42_RS29655	0.73	-0.5
2,021,356	-		RR42_RS29655	0.73	-1.2
2,021,425	+		RR42_RS29655	0.82	-1.0
2,021,425	+		RR42_RS29655	0.82	-2.7
2,021,425	+		RR42_RS29655	0.82	-0.7
2,021,425	+		RR42_RS29655	0.82	-0.2
2,021,426	-		RR42_RS29655	0.82	+0.7
2,021,426	-		RR42_RS29655	0.82	-0.6
2,021,426	-		RR42_RS29655	0.82	-1.2
2,021,426	-		RR42_RS29655	0.82	-2.4
2,021,426	-		RR42_RS29655	0.82	-0.3
2,021,426	-		RR42_RS29655	0.82	-1.0
2,021,464	+		RR42_RS29655	0.88	-1.1
2,021,465	-		RR42_RS29655	0.88	-1.2
2,021,528	-				-0.8
2,021,528	-				+0.4
2,021,528	-				+0.3
2,021,548	+				-0.1
2,021,548	+				-1.0
2,021,549	-				-1.6
2,021,549	-				-1.4
2,021,615	-				-1.5
2,021,615	-				-2.5
2,021,689	+				-0.9
2,021,689	+				-1.7
2,021,689	+				+0.1
2,021,726	+		RR42_RS29660	0.15	-0.9
2,021,732	+		RR42_RS29660	0.15	-2.3
2,021,732	+		RR42_RS29660	0.15	-0.8
2,021,732	+		RR42_RS29660	0.15	-2.2
2,022,033	+		RR42_RS29660	0.53	-1.4
2,022,033	+		RR42_RS29660	0.53	-1.3
2,022,034	-		RR42_RS29660	0.53	-0.5
2,022,075	+		RR42_RS29660	0.58	-2.1
2,022,076	-		RR42_RS29660	0.59	-1.6
2,022,076	-		RR42_RS29660	0.59	+0.7
2,022,076	-		RR42_RS29660	0.59	+2.0
2,022,167	+		RR42_RS29660	0.70	-1.2
2,022,167	+		RR42_RS29660	0.70	+0.9
2,022,167	+		RR42_RS29660	0.70	-0.5
2,022,168	-		RR42_RS29660	0.70	-0.2
2,022,168	-		RR42_RS29660	0.70	-0.6
2,022,168	-		RR42_RS29660	0.70	-0.3
2,022,205	+		RR42_RS29660	0.75	-0.8
2,022,206	-		RR42_RS29660	0.75	-1.6
2,022,206	-		RR42_RS29660	0.75	-2.2
2,022,250	+		RR42_RS29660	0.81	-0.6
2,022,250	+		RR42_RS29660	0.81	+1.0
2,022,250	+		RR42_RS29660	0.81	+0.2
2,022,250	+		RR42_RS29660	0.81	-1.2
2,022,250	+		RR42_RS29660	0.81	-0.8
2,022,250	+		RR42_RS29660	0.81	-0.0
2,022,251	-		RR42_RS29660	0.81	-0.6
2,022,251	-		RR42_RS29660	0.81	-0.7
2,022,251	-		RR42_RS29660	0.81	+0.0
2,022,251	-		RR42_RS29660	0.81	-0.2
2,022,254	+		RR42_RS29660	0.81	-1.2
2,022,304	+		RR42_RS29660	0.87	-1.2
2,022,305	-		RR42_RS29660	0.87	+1.5
2,022,318	-		RR42_RS29660	0.89	-1.6
2,022,402	+				-1.5
2,022,403	-				-0.7
2,022,414	+				+0.7
2,022,414	+				+0.1
2,022,414	+				-1.3
2,022,468	-				-1.2
2,022,494	+				-0.1
2,022,529	+				-1.0
2,022,530	-				-1.1
2,022,607	-				-1.6
2,022,687	+		RR42_RS29665	0.27	-0.7
2,022,688	-		RR42_RS29665	0.27	+0.1
2,022,722	+		RR42_RS29665	0.35	-2.1
2,022,723	-		RR42_RS29665	0.35	-1.9
2,022,780	+		RR42_RS29665	0.49	-2.6
2,022,781	-		RR42_RS29665	0.49	-2.3
2,022,786	+		RR42_RS29665	0.50	-1.4
2,022,787	-		RR42_RS29665	0.50	-1.3
2,022,888	+		RR42_RS29665	0.75	-1.8
2,022,889	-		RR42_RS29665	0.75	+0.4
2,022,921	+		RR42_RS29665	0.82	-0.6
2,022,922	-		RR42_RS29665	0.83	+0.5
2,022,924	+		RR42_RS29665	0.83	+0.6
2,022,925	-		RR42_RS29665	0.83	-0.3
2,022,934	-		RR42_RS29665	0.85	+0.5
2,022,943	+		RR42_RS29665	0.88	-1.1
2,022,958	+				+0.2
2,022,993	-				-0.0
2,022,996	+				-0.1
2,022,996	+				-0.5
2,022,997	-				-0.8
2,022,997	-				-1.3
2,023,000	-				-3.1
2,023,022	+				-0.5
2,023,022	+				-0.2
2,023,022	+				+0.1
2,023,022	+				-2.2
2,023,023	-				-0.6
2,023,023	-				-1.5
2,023,026	+				-1.9
2,023,039	+				-1.3
2,023,040	-				-1.6
2,023,068	+				-2.0
2,023,068	+				+0.4
2,023,069	-				-0.7
2,023,069	-				-1.5
2,023,069	-				-1.1
2,023,069	-				-0.2
2,023,070	+				-0.9
2,023,071	-				-0.9
2,023,110	+				-1.5
2,023,110	+				-0.9
2,023,111	-				-0.8
2,023,129	-				-1.2
2,023,166	-				-0.9
2,023,174	-				-1.7
2,023,192	+				-0.1
2,023,193	-				-1.1