Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29625

Experiment: R2A with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.005 mg/ml
2,014,073	+		RR42_RS29620	0.40	-0.0
2,014,073	+		RR42_RS29620	0.40	-0.3
2,014,107	+		RR42_RS29620	0.43	-0.8
2,014,107	+		RR42_RS29620	0.43	-1.7
2,014,226	+		RR42_RS29620	0.54	-0.4
2,014,226	+		RR42_RS29620	0.54	-0.8
2,014,297	+		RR42_RS29620	0.60	+0.4
2,014,297	+		RR42_RS29620	0.60	+0.3
2,014,297	+		RR42_RS29620	0.60	-1.8
2,014,297	+		RR42_RS29620	0.60	-1.8
2,014,375	+		RR42_RS29620	0.67	-0.5
2,014,473	+		RR42_RS29620	0.75	-0.7
2,014,473	+		RR42_RS29620	0.75	-1.4
2,014,473	+		RR42_RS29620	0.75	-1.5
2,014,474	-		RR42_RS29620	0.75	-0.8
2,014,474	-		RR42_RS29620	0.75	-0.6
2,014,508	+		RR42_RS29620	0.78	-0.2
2,014,509	-		RR42_RS29620	0.78	-2.1
2,014,558	+		RR42_RS29620	0.83	-0.7
2,014,558	+		RR42_RS29620	0.83	-3.8
2,014,558	+		RR42_RS29620	0.83	-1.7
2,014,558	+		RR42_RS29620	0.83	+0.5
2,014,559	-		RR42_RS29620	0.83	-0.5
2,014,559	-		RR42_RS29620	0.83	-1.2
2,014,559	-		RR42_RS29620	0.83	+0.8
2,014,559	-		RR42_RS29620	0.83	+0.9
2,014,559	-		RR42_RS29620	0.83	-0.9
2,014,562	+		RR42_RS29620	0.83	-0.7
2,014,562	+		RR42_RS29620	0.83	-1.5
2,014,563	-		RR42_RS29620	0.83	-1.7
2,014,563	-		RR42_RS29620	0.83	-0.6
2,014,581	-		RR42_RS29620	0.85	-0.9
2,014,581	-		RR42_RS29620	0.85	+0.1
2,014,647	+				-0.2
2,014,647	+				-0.9
2,014,647	+				+0.1
2,014,647	+				-0.8
2,014,648	-				-1.2
2,014,648	-				-0.8
2,014,740	+				-0.6
2,014,741	-				+0.2
2,014,786	+				+0.5
2,014,787	-				-0.7
2,014,807	+				+0.2
2,014,807	+				-1.1
2,014,807	+				+0.2
2,014,807	+				-0.2
2,014,807	+				-1.2
2,014,808	-				-0.8
2,014,808	-				+0.1
2,014,808	-				+0.7
2,014,808	-				-0.6
2,014,811	+				-0.5
2,014,811	+				+0.7
2,014,811	+				-1.4
2,014,811	+				-1.4
2,014,811	+				+0.0
2,014,811	+				-0.6
2,014,812	-				-1.6
2,014,812	-				-0.7
2,014,812	-				+0.1
2,014,812	-				+0.2
2,014,812	-				-0.1
2,014,944	+				+0.1
2,014,945	-				+0.4
2,014,980	+				+1.0
2,014,980	+				-0.5
2,014,980	+				-1.1
2,014,981	-				-0.0
2,014,981	-				-0.6
2,015,004	-				-0.4
2,015,021	+				+0.0
2,015,022	-				-0.2
2,015,022	-				-1.1
2,015,034	+				+2.3
2,015,034	+				+0.5
2,015,035	-				-1.2
2,015,049	+				-1.2
2,015,050	-				-0.7
2,015,050	-				-1.9
2,015,163	+		RR42_RS29625	0.12	-1.7
2,015,163	+		RR42_RS29625	0.12	-1.3
2,015,163	+		RR42_RS29625	0.12	-2.0
2,015,163	+		RR42_RS29625	0.12	-1.2
2,015,164	-		RR42_RS29625	0.12	+0.1
2,015,164	-		RR42_RS29625	0.12	-1.1
2,015,260	-		RR42_RS29625	0.22	+0.3
2,015,294	+		RR42_RS29625	0.26	-3.0
2,015,294	+		RR42_RS29625	0.26	-0.3
2,015,294	+		RR42_RS29625	0.26	-3.3
2,015,294	+		RR42_RS29625	0.26	-0.9
2,015,294	+		RR42_RS29625	0.26	+0.1
2,015,294	+		RR42_RS29625	0.26	-0.9
2,015,294	+		RR42_RS29625	0.26	-1.2
2,015,294	+		RR42_RS29625	0.26	+0.5
2,015,295	-		RR42_RS29625	0.26	-0.9
2,015,295	-		RR42_RS29625	0.26	-3.3
2,015,295	-		RR42_RS29625	0.26	-1.8
2,015,295	-		RR42_RS29625	0.26	-1.5
2,015,295	-		RR42_RS29625	0.26	+0.2
2,015,295	-		RR42_RS29625	0.26	-1.4
2,015,295	-		RR42_RS29625	0.26	-0.8
2,015,431	+		RR42_RS29625	0.41	-1.3
2,015,431	+		RR42_RS29625	0.41	-1.5
2,015,443	+		RR42_RS29625	0.43	-1.6
2,015,443	+		RR42_RS29625	0.43	-0.9
2,015,443	+		RR42_RS29625	0.43	+0.1
2,015,444	-		RR42_RS29625	0.43	+1.3
2,015,446	+		RR42_RS29625	0.43	-2.3
2,015,446	+		RR42_RS29625	0.43	-1.4
2,015,447	-		RR42_RS29625	0.43	-1.0
2,015,447	-		RR42_RS29625	0.43	+0.3
2,015,557	+		RR42_RS29625	0.55	-0.2
2,015,557	+		RR42_RS29625	0.55	-1.3
2,015,558	-		RR42_RS29625	0.55	+0.3
2,015,627	+		RR42_RS29625	0.63	-1.7
2,015,627	+		RR42_RS29625	0.63	-0.3
2,015,627	+		RR42_RS29625	0.63	-0.6
2,015,627	+		RR42_RS29625	0.63	-0.6
2,015,627	+		RR42_RS29625	0.63	+0.6
2,015,628	-		RR42_RS29625	0.63	-0.5
2,015,628	-		RR42_RS29625	0.63	-0.7
2,015,628	-		RR42_RS29625	0.63	-1.4
2,015,628	-		RR42_RS29625	0.63	-3.8
2,015,628	-		RR42_RS29625	0.63	-0.7
2,015,628	-		RR42_RS29625	0.63	-0.6
2,015,628	-		RR42_RS29625	0.63	-1.5
2,015,723	+		RR42_RS29625	0.74	-0.9
2,015,723	+		RR42_RS29625	0.74	-0.6
2,015,723	+		RR42_RS29625	0.74	-1.9
2,015,723	+		RR42_RS29625	0.74	-0.6
2,015,723	+		RR42_RS29625	0.74	-0.7
2,015,724	-		RR42_RS29625	0.74	-1.9
2,015,724	-		RR42_RS29625	0.74	-2.2
2,015,724	-		RR42_RS29625	0.74	-2.2
2,015,724	-		RR42_RS29625	0.74	-0.1
2,015,724	-		RR42_RS29625	0.74	-1.6
2,015,724	-		RR42_RS29625	0.74	-2.5
2,015,724	-		RR42_RS29625	0.74	-1.2
2,015,754	+		RR42_RS29625	0.77	-1.8
2,015,754	+		RR42_RS29625	0.77	-3.1
2,015,755	-		RR42_RS29625	0.77	-0.5
2,015,755	-		RR42_RS29625	0.77	-2.3
2,015,787	+		RR42_RS29625	0.81	+0.5
2,015,787	+		RR42_RS29625	0.81	-0.8
2,015,788	-		RR42_RS29625	0.81	+2.3
2,015,788	-		RR42_RS29625	0.81	-0.7
2,015,863	-		RR42_RS29625	0.89	-0.3
2,015,863	-		RR42_RS29625	0.89	+0.8
2,015,863	-		RR42_RS29625	0.89	-0.6
2,015,863	-		RR42_RS29625	0.89	-1.4
2,015,863	-		RR42_RS29625	0.89	-1.3
2,015,863	-		RR42_RS29625	0.89	+1.9
2,015,864	+		RR42_RS29625	0.89	-1.2
2,015,864	+		RR42_RS29625	0.89	-3.3
2,015,864	+		RR42_RS29625	0.89	-2.9
2,015,864	+		RR42_RS29625	0.89	-0.8
2,015,875	+				-2.3
2,015,875	+				+0.6
2,015,875	+				-1.1
2,015,876	-				-0.5
2,015,876	-				-1.4
2,015,876	-				-0.4
2,015,958	-				+0.7
2,015,996	+				-1.6
2,015,996	+				-0.5
2,015,997	-				-0.3
2,015,997	-				-1.1
2,015,997	-				+0.3
2,015,997	-				-2.8
2,015,997	-				-2.6
2,015,997	-				+0.1
2,015,997	-				-1.3
2,015,997	-				+0.9
2,016,012	+				+0.1
2,016,012	+				-0.5
2,016,030	+				-0.8
2,016,030	+				-0.9
2,016,033	+				-1.2
2,016,034	-				+0.2
2,016,034	-				-1.2
2,016,034	-				-1.2
2,016,034	-				-1.6
2,016,034	-				-4.0
2,016,044	+				-1.3
2,016,044	+				-1.8
2,016,044	+				-0.9
2,016,045	-				-0.4
2,016,056	+				-0.6
2,016,056	+				+0.4
2,016,056	+				-0.4
2,016,056	+				+0.6
2,016,184	+				-2.9
2,016,184	+				+1.5
2,016,184	+				-1.8
2,016,185	-				-2.8
2,016,269	-				-1.4
2,016,269	-				-1.4
2,016,284	-				-1.8
2,016,296	+				-1.1
2,016,340	+				-0.4
2,016,341	-				+0.9
2,016,394	+				-2.0
2,016,415	-				-0.3
2,016,415	-				-2.3
2,016,439	+				-1.0
2,016,450	+				-0.8
2,016,450	+				-0.1
2,016,451	-				-2.2
2,016,532	+				+0.1
2,016,532	+				-1.6
2,016,580	+		RR42_RS29630	0.22	+0.1
2,016,580	+		RR42_RS29630	0.22	-0.3
2,016,610	+		RR42_RS29630	0.33	-0.4
2,016,611	-		RR42_RS29630	0.33	-1.5
2,016,670	-		RR42_RS29630	0.53	-0.8
2,016,734	-		RR42_RS29630	0.75	-1.5
2,016,810	-				-2.1
2,016,822	+				-2.8
2,016,822	+				-0.5
2,016,823	-				-2.0