Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29375

Experiment: R2A with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.005 mg/ml
1,940,909	+		RR42_RS29370	0.37	-0.2
1,941,032	-		RR42_RS29370	0.47	-0.0
1,941,157	+		RR42_RS29370	0.58	-0.1
1,941,157	+		RR42_RS29370	0.58	+0.3
1,941,171	+		RR42_RS29370	0.59	-1.5
1,941,171	+		RR42_RS29370	0.59	+0.5
1,941,171	+		RR42_RS29370	0.59	-1.2
1,941,310	+		RR42_RS29370	0.70	+0.2
1,941,310	+		RR42_RS29370	0.70	-1.3
1,941,412	+		RR42_RS29370	0.78	+0.3
1,941,413	-		RR42_RS29370	0.78	+2.4
1,941,509	-		RR42_RS29370	0.86	+0.1
1,941,509	-		RR42_RS29370	0.86	-0.1
1,941,526	-		RR42_RS29370	0.88	+0.5
1,941,526	-		RR42_RS29370	0.88	+0.2
1,941,798	+				+0.3
1,941,798	+				+0.8
1,941,798	+				+0.9
1,941,798	+				+1.3
1,941,799	-				+0.7
1,941,799	-				-0.6
1,941,910	-				+0.2
1,941,910	-				-0.4
1,941,921	+				+0.5
1,941,921	+				+0.6
1,941,921	+				-0.4
1,941,922	-				+0.9
1,941,922	-				-1.3
1,941,922	-				+0.4
1,941,942	+				-0.4
1,941,943	-				+0.5
1,942,009	-		RR42_RS29375	0.12	+0.4
1,942,056	+		RR42_RS29375	0.14	+0.8
1,942,057	-		RR42_RS29375	0.14	+1.1
1,942,107	+		RR42_RS29375	0.16	+0.7
1,942,107	+		RR42_RS29375	0.16	+1.1
1,942,107	+		RR42_RS29375	0.16	-1.0
1,942,107	+		RR42_RS29375	0.16	-0.1
1,942,108	-		RR42_RS29375	0.16	-1.1
1,942,206	+		RR42_RS29375	0.20	+2.0
1,942,207	-		RR42_RS29375	0.20	+1.9
1,942,207	-		RR42_RS29375	0.20	+0.4
1,942,243	-		RR42_RS29375	0.22	+0.1
1,942,297	-		RR42_RS29375	0.24	+0.1
1,942,297	-		RR42_RS29375	0.24	+0.7
1,942,297	-		RR42_RS29375	0.24	-0.0
1,942,453	-		RR42_RS29375	0.30	-0.7
1,942,453	-		RR42_RS29375	0.30	+0.0
1,942,453	-		RR42_RS29375	0.30	+0.3
1,942,453	-		RR42_RS29375	0.30	+1.6
1,942,469	-		RR42_RS29375	0.31	+0.2
1,942,478	-		RR42_RS29375	0.31	+0.4
1,942,639	-		RR42_RS29375	0.38	-0.9
1,942,639	-		RR42_RS29375	0.38	+0.9
1,942,689	+		RR42_RS29375	0.40	+0.8
1,942,689	+		RR42_RS29375	0.40	-1.1
1,942,690	-		RR42_RS29375	0.40	-0.3
1,942,833	+		RR42_RS29375	0.45	-0.5
1,942,833	+		RR42_RS29375	0.45	-0.5
1,942,833	+		RR42_RS29375	0.45	-1.4
1,942,834	-		RR42_RS29375	0.45	+0.8
1,942,834	-		RR42_RS29375	0.45	-0.4
1,942,872	+		RR42_RS29375	0.47	-0.1
1,942,873	-		RR42_RS29375	0.47	+0.3
1,942,894	-		RR42_RS29375	0.48	+0.0
1,943,007	+		RR42_RS29375	0.52	+0.1
1,943,007	+		RR42_RS29375	0.52	+0.9
1,943,007	+		RR42_RS29375	0.52	+0.0
1,943,007	+		RR42_RS29375	0.52	+0.2
1,943,007	+		RR42_RS29375	0.52	-0.6
1,943,008	-		RR42_RS29375	0.52	+0.7
1,943,008	-		RR42_RS29375	0.52	+0.4
1,943,040	+		RR42_RS29375	0.54	+0.0
1,943,053	+		RR42_RS29375	0.54	-1.5
1,943,054	-		RR42_RS29375	0.54	+1.0
1,943,086	-		RR42_RS29375	0.56	+0.7
1,943,086	-		RR42_RS29375	0.56	+0.6
1,943,194	+		RR42_RS29375	0.60	-1.1
1,943,194	+		RR42_RS29375	0.60	-0.4
1,943,194	+		RR42_RS29375	0.60	-0.1
1,943,195	-		RR42_RS29375	0.60	-0.1
1,943,195	-		RR42_RS29375	0.60	-0.4
1,943,195	-		RR42_RS29375	0.60	+0.1
1,943,196	+		RR42_RS29375	0.60	-0.0
1,943,463	+		RR42_RS29375	0.71	-0.9
1,943,463	+		RR42_RS29375	0.71	-0.1
1,943,464	-		RR42_RS29375	0.71	+1.5
1,943,464	-		RR42_RS29375	0.71	+0.8
1,943,481	+		RR42_RS29375	0.71	-0.6
1,943,532	+		RR42_RS29375	0.74	-0.9
1,943,532	+		RR42_RS29375	0.74	-1.0
1,943,532	+		RR42_RS29375	0.74	-0.2
1,943,532	+		RR42_RS29375	0.74	+0.2
1,943,532	+		RR42_RS29375	0.74	-0.4
1,943,532	+		RR42_RS29375	0.74	+2.2
1,943,532	+		RR42_RS29375	0.74	+0.4
1,943,532	+		RR42_RS29375	0.74	-0.2
1,943,533	-		RR42_RS29375	0.74	+1.0
1,943,533	-		RR42_RS29375	0.74	+0.6
1,943,589	+		RR42_RS29375	0.76	-1.5
1,943,590	-		RR42_RS29375	0.76	+0.2
1,943,590	-		RR42_RS29375	0.76	-0.8
1,943,750	+		RR42_RS29375	0.82	+0.1
1,943,788	+		RR42_RS29375	0.84	-0.7
1,943,809	+		RR42_RS29375	0.85	-0.5
1,943,810	-		RR42_RS29375	0.85	+1.3
1,943,810	-		RR42_RS29375	0.85	+1.3
1,943,811	+		RR42_RS29375	0.85	-0.2
1,943,811	+		RR42_RS29375	0.85	+0.3
1,943,811	+		RR42_RS29375	0.85	+1.6
1,943,812	-		RR42_RS29375	0.85	-0.3
1,943,812	-		RR42_RS29375	0.85	-0.2
1,943,859	+		RR42_RS29375	0.87	-0.2
1,943,859	+		RR42_RS29375	0.87	-0.4
1,943,859	+		RR42_RS29375	0.87	+0.8
1,943,860	-		RR42_RS29375	0.87	-0.0
1,944,090	+				-0.3
1,944,091	-				+0.9
1,944,091	-				-0.4
1,944,231	+				+0.6
1,944,231	+				-1.8
1,944,232	-				-2.6
1,944,232	-				-0.2
1,944,232	-				+1.1
1,944,232	-				-0.0
1,944,402	+		RR42_RS29380	0.38	+0.1
1,944,403	-		RR42_RS29380	0.38	+1.1
1,944,427	+		RR42_RS29380	0.43	-1.1
1,944,427	+		RR42_RS29380	0.43	+0.8
1,944,428	-		RR42_RS29380	0.43	+1.2
1,944,428	-		RR42_RS29380	0.43	+0.0
1,944,872	+				+1.4
1,944,921	+				+1.7
1,944,921	+				-0.2
1,944,921	+				-0.4
1,944,922	-				-0.7
1,944,922	-				+0.7
1,944,935	-				+0.3
1,944,974	-				+0.2
1,944,974	-				+0.2
1,944,978	+				+0.3
1,944,979	-				+1.6
1,944,979	-				-1.4
1,944,984	+				+0.5
1,944,985	-				+0.3
1,944,985	-				+0.6
1,945,128	+				-0.1
1,945,128	+				-1.0
1,945,129	-				-0.9