Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29035

Experiment: R2A with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.005 mg/ml
1,867,827	+		RR42_RS29030	0.10	+1.3
1,867,827	+		RR42_RS29030	0.10	+0.3
1,867,827	+		RR42_RS29030	0.10	-0.4
1,867,827	+		RR42_RS29030	0.10	+0.5
1,867,828	-		RR42_RS29030	0.10	-0.2
1,867,828	-		RR42_RS29030	0.10	-0.8
1,867,828	-		RR42_RS29030	0.10	+0.1
1,867,980	+		RR42_RS29030	0.26	-0.6
1,867,980	+		RR42_RS29030	0.26	-0.3
1,868,046	+		RR42_RS29030	0.33	+0.9
1,868,047	-		RR42_RS29030	0.33	+1.7
1,868,047	-		RR42_RS29030	0.33	+0.4
1,868,047	-		RR42_RS29030	0.33	-0.7
1,868,047	-		RR42_RS29030	0.33	+0.6
1,868,406	+		RR42_RS29030	0.70	-0.6
1,868,406	+		RR42_RS29030	0.70	-0.1
1,868,407	-		RR42_RS29030	0.71	-0.9
1,868,623	-				-0.4
1,868,644	+				+0.3
1,868,645	-				+1.3
1,868,645	-				+1.0
1,868,645	-				-1.9
1,868,688	+				+1.3
1,868,688	+				+0.8
1,868,784	+				-0.9
1,868,784	+				+0.5
1,868,784	+				+1.8
1,868,784	+				+0.3
1,868,785	-				+2.3
1,868,859	+				-0.1
1,868,859	+				-0.6
1,868,860	-				+0.3
1,868,860	-				+0.3
1,868,898	-				-1.2
1,868,898	-				+0.3
1,868,908	+				-0.1
1,868,961	+				+0.6
1,868,961	+				+0.2
1,868,961	+				+0.7
1,868,962	-				-1.4
1,868,962	-				+1.0
1,868,982	+				-1.8
1,868,982	+				-0.4
1,868,983	-				+0.1
1,869,067	-		RR42_RS29035	0.14	+0.5
1,869,199	+		RR42_RS29035	0.22	+0.3
1,869,199	+		RR42_RS29035	0.22	+0.4
1,869,199	+		RR42_RS29035	0.22	-0.5
1,869,199	+		RR42_RS29035	0.22	-0.6
1,869,222	+		RR42_RS29035	0.24	+0.7
1,869,417	+		RR42_RS29035	0.35	-1.1
1,869,418	-		RR42_RS29035	0.35	+0.8
1,869,478	-		RR42_RS29035	0.39	+0.2
1,869,478	-		RR42_RS29035	0.39	+2.5
1,869,478	-		RR42_RS29035	0.39	-0.1
1,869,552	+		RR42_RS29035	0.43	+0.5
1,869,614	+		RR42_RS29035	0.47	+0.8
1,869,820	-		RR42_RS29035	0.59	-0.1
1,869,820	-		RR42_RS29035	0.59	+0.3
1,869,882	+		RR42_RS29035	0.63	+0.1
1,869,882	+		RR42_RS29035	0.63	+0.0
1,869,882	+		RR42_RS29035	0.63	-0.1
1,869,882	+		RR42_RS29035	0.63	+1.1
1,869,882	+		RR42_RS29035	0.63	+0.5
1,869,882	+		RR42_RS29035	0.63	+0.7
1,869,882	+		RR42_RS29035	0.63	-0.6
1,869,882	+		RR42_RS29035	0.63	-0.9
1,869,882	+		RR42_RS29035	0.63	+0.4
1,869,883	-		RR42_RS29035	0.63	+1.0
1,869,883	-		RR42_RS29035	0.63	-2.3
1,869,883	-		RR42_RS29035	0.63	+0.4
1,869,884	+		RR42_RS29035	0.63	+0.2
1,869,884	+		RR42_RS29035	0.63	+0.8
1,869,885	-		RR42_RS29035	0.63	+1.1
1,869,885	-		RR42_RS29035	0.63	-0.3
1,869,885	-		RR42_RS29035	0.63	+0.2
1,870,098	+		RR42_RS29035	0.76	+1.0
1,870,143	+		RR42_RS29035	0.78	-0.2
1,870,191	+		RR42_RS29035	0.81	+0.9
1,870,192	-		RR42_RS29035	0.81	+0.5
1,870,233	+		RR42_RS29035	0.84	-0.0
1,870,234	-		RR42_RS29035	0.84	-0.2
1,870,269	+		RR42_RS29035	0.86	+0.4
1,870,269	+		RR42_RS29035	0.86	+0.5
1,870,269	+		RR42_RS29035	0.86	+0.5
1,870,270	-		RR42_RS29035	0.86	-0.0
1,870,270	-		RR42_RS29035	0.86	-0.9
1,870,419	+				-0.5
1,870,419	+				-0.2
1,870,420	-				+0.2
1,870,421	+				-0.7
1,870,421	+				+0.3
1,870,421	+				+0.4
1,870,422	-				-0.7
1,870,422	-				-0.7
1,870,422	-				-0.2
1,870,422	-				-0.9
1,870,599	+				+1.3
1,870,599	+				+0.6
1,870,599	+				+0.1
1,870,599	+				-0.5
1,870,599	+				-0.2
1,870,599	+				+1.3
1,870,600	-				+0.1
1,870,600	-				+0.5
1,870,600	-				+2.0
1,870,600	-				+1.1
1,870,600	-				+0.3
1,870,601	+				+0.6
1,870,602	-				+0.2
1,870,602	-				+1.3
1,870,602	-				+0.5
1,870,603	+				+0.2
1,870,604	-				-0.0
1,870,841	+				+1.7
1,870,841	+				+0.2
1,870,842	-				-2.3
1,870,842	-				-0.8
1,870,845	+				+0.5
1,870,846	-				-0.3
1,870,846	-				-1.6
1,870,852	-				+0.8
1,870,934	+		RR42_RS29040	0.18	+0.3
1,871,048	+		RR42_RS29040	0.42	+0.3
1,871,186	+		RR42_RS29040	0.72	+0.1
1,871,186	+		RR42_RS29040	0.72	-0.0
1,871,187	-		RR42_RS29040	0.72	-0.6
1,871,187	-		RR42_RS29040	0.72	-0.3
1,871,432	+				+2.1
1,871,500	-				-1.1