Experiment: R2A with Polymyxin B sulfate 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS26665 and RR42_RS26670 are separated by 13 nucleotides RR42_RS26670 and RR42_RS26675 are separated by 21 nucleotides
RR42_RS26665: RR42_RS26665 - allophanate hydrolase, at 1,337,127 to 1,338,980
_RS26665
RR42_RS26670: RR42_RS26670 - urea carboxylase, at 1,338,994 to 1,342,593
_RS26670
RR42_RS26675: RR42_RS26675 - methyltransferase, at 1,342,615 to 1,343,463
_RS26675
Position (kb) 1338
1339
1340
1341
1342
1343 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1338.072 kb on + strand, within RR42_RS26665 at 1338.072 kb on + strand, within RR42_RS26665 at 1338.073 kb on - strand, within RR42_RS26665 at 1338.073 kb on - strand, within RR42_RS26665 at 1338.186 kb on - strand, within RR42_RS26665 at 1338.213 kb on + strand, within RR42_RS26665 at 1338.297 kb on + strand, within RR42_RS26665 at 1338.297 kb on + strand, within RR42_RS26665 at 1338.297 kb on + strand, within RR42_RS26665 at 1338.298 kb on - strand, within RR42_RS26665 at 1338.300 kb on - strand, within RR42_RS26665 at 1338.300 kb on - strand, within RR42_RS26665 at 1338.300 kb on - strand, within RR42_RS26665 at 1338.354 kb on + strand, within RR42_RS26665 at 1338.354 kb on + strand, within RR42_RS26665 at 1338.355 kb on - strand, within RR42_RS26665 at 1338.355 kb on - strand, within RR42_RS26665 at 1338.356 kb on + strand, within RR42_RS26665 at 1338.612 kb on - strand, within RR42_RS26665 at 1339.008 kb on - strand at 1339.171 kb on + strand at 1339.171 kb on + strand at 1339.171 kb on + strand at 1339.172 kb on - strand at 1339.822 kb on + strand, within RR42_RS26670 at 1339.823 kb on - strand, within RR42_RS26670 at 1339.846 kb on + strand, within RR42_RS26670 at 1340.011 kb on + strand, within RR42_RS26670 at 1340.012 kb on - strand, within RR42_RS26670 at 1340.121 kb on - strand, within RR42_RS26670 at 1340.248 kb on + strand, within RR42_RS26670 at 1340.248 kb on + strand, within RR42_RS26670 at 1340.249 kb on - strand, within RR42_RS26670 at 1340.362 kb on + strand, within RR42_RS26670 at 1340.362 kb on + strand, within RR42_RS26670 at 1340.363 kb on - strand, within RR42_RS26670 at 1340.363 kb on - strand, within RR42_RS26670 at 1340.363 kb on - strand, within RR42_RS26670 at 1340.363 kb on - strand, within RR42_RS26670 at 1340.440 kb on + strand, within RR42_RS26670 at 1340.441 kb on - strand, within RR42_RS26670 at 1340.441 kb on - strand, within RR42_RS26670 at 1340.671 kb on + strand, within RR42_RS26670 at 1340.671 kb on + strand, within RR42_RS26670 at 1340.671 kb on + strand, within RR42_RS26670 at 1340.671 kb on + strand, within RR42_RS26670 at 1340.707 kb on + strand, within RR42_RS26670 at 1340.708 kb on - strand, within RR42_RS26670 at 1340.708 kb on - strand, within RR42_RS26670 at 1340.983 kb on + strand, within RR42_RS26670 at 1340.983 kb on + strand, within RR42_RS26670 at 1340.984 kb on - strand, within RR42_RS26670 at 1341.092 kb on - strand, within RR42_RS26670 at 1341.428 kb on - strand, within RR42_RS26670 at 1341.428 kb on - strand, within RR42_RS26670 at 1341.442 kb on + strand, within RR42_RS26670 at 1341.527 kb on + strand, within RR42_RS26670 at 1341.528 kb on - strand, within RR42_RS26670 at 1341.536 kb on + strand, within RR42_RS26670 at 1341.868 kb on + strand, within RR42_RS26670 at 1341.868 kb on + strand, within RR42_RS26670 at 1341.869 kb on - strand, within RR42_RS26670 at 1341.928 kb on + strand, within RR42_RS26670 at 1341.929 kb on - strand, within RR42_RS26670 at 1341.982 kb on + strand, within RR42_RS26670 at 1341.982 kb on + strand, within RR42_RS26670 at 1341.983 kb on - strand, within RR42_RS26670 at 1341.983 kb on - strand, within RR42_RS26670 at 1341.984 kb on + strand, within RR42_RS26670 at 1341.984 kb on + strand, within RR42_RS26670 at 1341.984 kb on + strand, within RR42_RS26670 at 1341.984 kb on + strand, within RR42_RS26670 at 1341.984 kb on + strand, within RR42_RS26670 at 1341.984 kb on + strand, within RR42_RS26670 at 1341.985 kb on - strand, within RR42_RS26670 at 1341.985 kb on - strand, within RR42_RS26670 at 1341.985 kb on - strand, within RR42_RS26670 at 1341.994 kb on + strand, within RR42_RS26670 at 1341.994 kb on + strand, within RR42_RS26670 at 1341.994 kb on + strand, within RR42_RS26670 at 1342.217 kb on - strand, within RR42_RS26670 at 1342.226 kb on - strand, within RR42_RS26670 at 1342.817 kb on + strand, within RR42_RS26675 at 1342.817 kb on + strand, within RR42_RS26675 at 1342.818 kb on - strand, within RR42_RS26675 at 1342.818 kb on - strand, within RR42_RS26675 at 1342.832 kb on + strand, within RR42_RS26675 at 1342.832 kb on + strand, within RR42_RS26675 at 1342.895 kb on - strand, within RR42_RS26675 at 1342.895 kb on - strand at 1342.922 kb on + strand, within RR42_RS26675 at 1342.922 kb on + strand, within RR42_RS26675 at 1342.922 kb on + strand, within RR42_RS26675 at 1342.923 kb on - strand, within RR42_RS26675 at 1342.923 kb on - strand, within RR42_RS26675 at 1343.066 kb on + strand, within RR42_RS26675 at 1343.067 kb on - strand, within RR42_RS26675 at 1343.154 kb on - strand, within RR42_RS26675 at 1343.211 kb on - strand, within RR42_RS26675 at 1343.295 kb on - strand, within RR42_RS26675 at 1343.483 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.005 mg/ml remove 1,338,072 + RR42_RS26665 0.51 +0.4 1,338,072 + RR42_RS26665 0.51 +0.8 1,338,073 - RR42_RS26665 0.51 -0.9 1,338,073 - RR42_RS26665 0.51 +0.7 1,338,186 - RR42_RS26665 0.57 -0.3 1,338,213 + RR42_RS26665 0.59 +0.4 1,338,297 + RR42_RS26665 0.63 -1.0 1,338,297 + RR42_RS26665 0.63 -0.7 1,338,297 + RR42_RS26665 0.63 -2.1 1,338,298 - RR42_RS26665 0.63 -0.0 1,338,300 - RR42_RS26665 0.63 -0.9 1,338,300 - RR42_RS26665 0.63 +0.6 1,338,300 - RR42_RS26665 0.63 -0.2 1,338,354 + RR42_RS26665 0.66 -0.9 1,338,354 + RR42_RS26665 0.66 -0.4 1,338,355 - RR42_RS26665 0.66 +0.1 1,338,355 - RR42_RS26665 0.66 -1.5 1,338,356 + RR42_RS26665 0.66 +0.0 1,338,612 - RR42_RS26665 0.80 +0.7 1,339,008 - +0.3 1,339,171 + +0.7 1,339,171 + +0.8 1,339,171 + +0.9 1,339,172 - +0.6 1,339,822 + RR42_RS26670 0.23 -0.7 1,339,823 - RR42_RS26670 0.23 -0.8 1,339,846 + RR42_RS26670 0.24 -0.2 1,340,011 + RR42_RS26670 0.28 -0.5 1,340,012 - RR42_RS26670 0.28 -0.5 1,340,121 - RR42_RS26670 0.31 +0.6 1,340,248 + RR42_RS26670 0.35 -1.2 1,340,248 + RR42_RS26670 0.35 -0.5 1,340,249 - RR42_RS26670 0.35 +1.6 1,340,362 + RR42_RS26670 0.38 +0.2 1,340,362 + RR42_RS26670 0.38 -0.6 1,340,363 - RR42_RS26670 0.38 +1.8 1,340,363 - RR42_RS26670 0.38 -1.0 1,340,363 - RR42_RS26670 0.38 -0.6 1,340,363 - RR42_RS26670 0.38 +1.2 1,340,440 + RR42_RS26670 0.40 +0.8 1,340,441 - RR42_RS26670 0.40 +0.3 1,340,441 - RR42_RS26670 0.40 +0.3 1,340,671 + RR42_RS26670 0.47 +0.5 1,340,671 + RR42_RS26670 0.47 -0.7 1,340,671 + RR42_RS26670 0.47 +0.3 1,340,671 + RR42_RS26670 0.47 -0.9 1,340,707 + RR42_RS26670 0.48 +1.4 1,340,708 - RR42_RS26670 0.48 +1.3 1,340,708 - RR42_RS26670 0.48 -0.7 1,340,983 + RR42_RS26670 0.55 +0.6 1,340,983 + RR42_RS26670 0.55 -1.3 1,340,984 - RR42_RS26670 0.55 -1.3 1,341,092 - RR42_RS26670 0.58 +0.5 1,341,428 - RR42_RS26670 0.68 +0.5 1,341,428 - RR42_RS26670 0.68 -1.2 1,341,442 + RR42_RS26670 0.68 +0.3 1,341,527 + RR42_RS26670 0.70 -1.2 1,341,528 - RR42_RS26670 0.70 -1.0 1,341,536 + RR42_RS26670 0.71 +0.3 1,341,868 + RR42_RS26670 0.80 -1.1 1,341,868 + RR42_RS26670 0.80 +0.0 1,341,869 - RR42_RS26670 0.80 +0.6 1,341,928 + RR42_RS26670 0.81 -1.1 1,341,929 - RR42_RS26670 0.82 -0.3 1,341,982 + RR42_RS26670 0.83 -2.2 1,341,982 + RR42_RS26670 0.83 -0.5 1,341,983 - RR42_RS26670 0.83 +0.1 1,341,983 - RR42_RS26670 0.83 +0.2 1,341,984 + RR42_RS26670 0.83 -0.8 1,341,984 + RR42_RS26670 0.83 +0.1 1,341,984 + RR42_RS26670 0.83 +0.3 1,341,984 + RR42_RS26670 0.83 -0.1 1,341,984 + RR42_RS26670 0.83 -0.5 1,341,984 + RR42_RS26670 0.83 +0.2 1,341,985 - RR42_RS26670 0.83 -0.5 1,341,985 - RR42_RS26670 0.83 -2.1 1,341,985 - RR42_RS26670 0.83 -0.8 1,341,994 + RR42_RS26670 0.83 -0.2 1,341,994 + RR42_RS26670 0.83 -0.6 1,341,994 + RR42_RS26670 0.83 -1.1 1,342,217 - RR42_RS26670 0.90 +0.2 1,342,226 - RR42_RS26670 0.90 -2.2 1,342,817 + RR42_RS26675 0.24 -0.2 1,342,817 + RR42_RS26675 0.24 -0.4 1,342,818 - RR42_RS26675 0.24 -1.6 1,342,818 - RR42_RS26675 0.24 +0.4 1,342,832 + RR42_RS26675 0.26 +0.5 1,342,832 + RR42_RS26675 0.26 -0.6 1,342,895 - RR42_RS26675 0.33 +0.7 1,342,895 - +1.9 1,342,922 + RR42_RS26675 0.36 +0.9 1,342,922 + RR42_RS26675 0.36 +0.7 1,342,922 + RR42_RS26675 0.36 -1.0 1,342,923 - RR42_RS26675 0.36 +0.4 1,342,923 - RR42_RS26675 0.36 -0.5 1,343,066 + RR42_RS26675 0.53 -0.1 1,343,067 - RR42_RS26675 0.53 +0.2 1,343,154 - RR42_RS26675 0.63 +0.5 1,343,211 - RR42_RS26675 0.70 -0.7 1,343,295 - RR42_RS26675 0.80 -1.3 1,343,483 - -0.3
Or see this region's nucleotide sequence