Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21970

Experiment: R2A with Polymyxin B sulfate 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21965 and RR42_RS21970 are separated by 923 nucleotidesRR42_RS21970 and RR42_RS21975 overlap by 38 nucleotides RR42_RS21965: RR42_RS21965 - hypothetical protein, at 253,337 to 254,548 _RS21965 RR42_RS21970: RR42_RS21970 - hypothetical protein, at 255,472 to 258,339 _RS21970 RR42_RS21975: RR42_RS21975 - hypothetical protein, at 258,302 to 262,522 _RS21975 Position (kb) 255 256 257 258 259Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 254.616 kb on + strandat 254.617 kb on - strandat 254.623 kb on + strandat 254.623 kb on + strandat 254.624 kb on - strandat 254.630 kb on + strandat 254.631 kb on - strandat 254.754 kb on + strandat 254.831 kb on + strandat 254.949 kb on + strandat 254.950 kb on - strandat 254.950 kb on - strandat 254.950 kb on - strandat 254.950 kb on - strandat 254.950 kb on - strandat 254.957 kb on + strandat 254.957 kb on + strandat 254.957 kb on + strandat 254.958 kb on - strandat 254.958 kb on - strandat 255.135 kb on + strandat 255.135 kb on + strandat 255.135 kb on + strandat 255.135 kb on + strandat 255.135 kb on + strandat 255.136 kb on - strandat 255.136 kb on - strandat 255.149 kb on + strandat 255.156 kb on - strandat 255.156 kb on - strandat 255.163 kb on + strandat 255.163 kb on + strandat 255.164 kb on - strandat 255.164 kb on - strandat 255.164 kb on - strandat 255.165 kb on + strandat 255.165 kb on + strandat 255.210 kb on + strandat 255.210 kb on + strandat 255.211 kb on - strandat 255.684 kb on + strandat 255.700 kb on + strandat 255.701 kb on - strandat 256.055 kb on - strand, within RR42_RS21970at 256.174 kb on + strand, within RR42_RS21970at 256.273 kb on + strand, within RR42_RS21970at 256.274 kb on - strand, within RR42_RS21970at 256.417 kb on + strand, within RR42_RS21970at 256.417 kb on + strand, within RR42_RS21970at 256.418 kb on - strand, within RR42_RS21970at 256.418 kb on - strand, within RR42_RS21970at 256.418 kb on - strand, within RR42_RS21970at 256.427 kb on - strand, within RR42_RS21970at 256.811 kb on - strand, within RR42_RS21970at 256.847 kb on + strand, within RR42_RS21970at 256.848 kb on - strand, within RR42_RS21970at 256.848 kb on - strand, within RR42_RS21970at 256.858 kb on + strand, within RR42_RS21970at 257.143 kb on + strand, within RR42_RS21970at 257.143 kb on + strand, within RR42_RS21970at 257.143 kb on + strand, within RR42_RS21970at 257.143 kb on + strand, within RR42_RS21970at 257.144 kb on - strand, within RR42_RS21970at 257.200 kb on + strand, within RR42_RS21970at 257.201 kb on - strand, within RR42_RS21970at 257.323 kb on + strand, within RR42_RS21970at 257.367 kb on + strand, within RR42_RS21970at 257.367 kb on + strand, within RR42_RS21970at 257.368 kb on - strand, within RR42_RS21970at 257.368 kb on - strand, within RR42_RS21970at 257.497 kb on - strand, within RR42_RS21970at 257.577 kb on - strand, within RR42_RS21970at 257.577 kb on - strand, within RR42_RS21970at 257.605 kb on + strand, within RR42_RS21970at 257.605 kb on + strand, within RR42_RS21970at 257.605 kb on + strand, within RR42_RS21970at 257.605 kb on + strand, within RR42_RS21970at 257.629 kb on + strand, within RR42_RS21970at 257.633 kb on - strand, within RR42_RS21970at 257.633 kb on - strand, within RR42_RS21970at 257.704 kb on + strand, within RR42_RS21970at 257.704 kb on + strand, within RR42_RS21970at 257.704 kb on + strand, within RR42_RS21970at 257.704 kb on + strand, within RR42_RS21970at 257.705 kb on - strand, within RR42_RS21970at 257.705 kb on - strand, within RR42_RS21970at 257.707 kb on + strand, within RR42_RS21970at 257.707 kb on + strand, within RR42_RS21970at 257.717 kb on - strand, within RR42_RS21970at 257.761 kb on + strand, within RR42_RS21970at 257.767 kb on + strand, within RR42_RS21970at 257.810 kb on - strand, within RR42_RS21970at 257.810 kb on - strand, within RR42_RS21970at 258.004 kb on + strand, within RR42_RS21970at 258.005 kb on - strand, within RR42_RS21970at 258.060 kb on + strandat 258.173 kb on - strandat 258.549 kb on - strandat 258.773 kb on + strand, within RR42_RS21975at 258.773 kb on + strand, within RR42_RS21975at 258.774 kb on - strand, within RR42_RS21975at 258.774 kb on - strand, within RR42_RS21975at 258.897 kb on - strand, within RR42_RS21975at 258.897 kb on - strand, within RR42_RS21975at 259.052 kb on + strand, within RR42_RS21975at 259.052 kb on + strand, within RR42_RS21975at 259.052 kb on + strand, within RR42_RS21975at 259.211 kb on + strand, within RR42_RS21975at 259.212 kb on - strand, within RR42_RS21975at 259.212 kb on - strand, within RR42_RS21975

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.005 mg/ml
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254,616 + -0.7
254,617 - -1.4
254,623 + -0.8
254,623 + -0.2
254,624 - -0.1
254,630 + +0.5
254,631 - +0.5
254,754 + +0.3
254,831 + -0.8
254,949 + +1.6
254,950 - +1.1
254,950 - +1.7
254,950 - -2.1
254,950 - +0.8
254,950 - -0.1
254,957 + +0.1
254,957 + -0.0
254,957 + +0.1
254,958 - -0.3
254,958 - -1.8
255,135 + -1.9
255,135 + +4.1
255,135 + +0.4
255,135 + +0.9
255,135 + -0.2
255,136 - +0.7
255,136 - +0.4
255,149 + +0.7
255,156 - +1.5
255,156 - +0.2
255,163 + +0.0
255,163 + +0.0
255,164 - +0.7
255,164 - -2.2
255,164 - -0.4
255,165 + +0.5
255,165 + +0.1
255,210 + -0.1
255,210 + +0.2
255,211 - -0.5
255,684 + +0.2
255,700 + -0.3
255,701 - +0.0
256,055 - RR42_RS21970 0.20 +1.4
256,174 + RR42_RS21970 0.24 +0.1
256,273 + RR42_RS21970 0.28 -0.7
256,274 - RR42_RS21970 0.28 -2.5
256,417 + RR42_RS21970 0.33 -0.4
256,417 + RR42_RS21970 0.33 -1.2
256,418 - RR42_RS21970 0.33 -0.7
256,418 - RR42_RS21970 0.33 -0.6
256,418 - RR42_RS21970 0.33 -0.3
256,427 - RR42_RS21970 0.33 +0.9
256,811 - RR42_RS21970 0.47 -0.1
256,847 + RR42_RS21970 0.48 -0.1
256,848 - RR42_RS21970 0.48 -1.8
256,848 - RR42_RS21970 0.48 -0.6
256,858 + RR42_RS21970 0.48 +0.1
257,143 + RR42_RS21970 0.58 -1.1
257,143 + RR42_RS21970 0.58 +0.7
257,143 + RR42_RS21970 0.58 -0.3
257,143 + RR42_RS21970 0.58 -0.3
257,144 - RR42_RS21970 0.58 -0.5
257,200 + RR42_RS21970 0.60 +0.6
257,201 - RR42_RS21970 0.60 -0.6
257,323 + RR42_RS21970 0.65 -1.5
257,367 + RR42_RS21970 0.66 -1.2
257,367 + RR42_RS21970 0.66 +0.2
257,368 - RR42_RS21970 0.66 -0.8
257,368 - RR42_RS21970 0.66 -0.1
257,497 - RR42_RS21970 0.71 -0.2
257,577 - RR42_RS21970 0.73 -0.9
257,577 - RR42_RS21970 0.73 -0.3
257,605 + RR42_RS21970 0.74 +0.3
257,605 + RR42_RS21970 0.74 +0.4
257,605 + RR42_RS21970 0.74 -0.4
257,605 + RR42_RS21970 0.74 +0.3
257,629 + RR42_RS21970 0.75 +1.5
257,633 - RR42_RS21970 0.75 +0.9
257,633 - RR42_RS21970 0.75 -0.7
257,704 + RR42_RS21970 0.78 +0.0
257,704 + RR42_RS21970 0.78 +0.1
257,704 + RR42_RS21970 0.78 -0.4
257,704 + RR42_RS21970 0.78 -0.8
257,705 - RR42_RS21970 0.78 -0.4
257,705 - RR42_RS21970 0.78 +0.4
257,707 + RR42_RS21970 0.78 -1.8
257,707 + RR42_RS21970 0.78 +1.2
257,717 - RR42_RS21970 0.78 +0.9
257,761 + RR42_RS21970 0.80 +1.0
257,767 + RR42_RS21970 0.80 -0.0
257,810 - RR42_RS21970 0.82 -0.2
257,810 - RR42_RS21970 0.82 -0.6
258,004 + RR42_RS21970 0.88 -0.9
258,005 - RR42_RS21970 0.88 +0.0
258,060 + +0.1
258,173 - +0.4
258,549 - -0.4
258,773 + RR42_RS21975 0.11 +0.5
258,773 + RR42_RS21975 0.11 -0.4
258,774 - RR42_RS21975 0.11 +0.8
258,774 - RR42_RS21975 0.11 -0.8
258,897 - RR42_RS21975 0.14 -0.2
258,897 - RR42_RS21975 0.14 +0.6
259,052 + RR42_RS21975 0.18 +0.1
259,052 + RR42_RS21975 0.18 -0.2
259,052 + RR42_RS21975 0.18 +0.1
259,211 + RR42_RS21975 0.22 +0.4
259,212 - RR42_RS21975 0.22 -0.4
259,212 - RR42_RS21975 0.22 -1.6

Or see this region's nucleotide sequence