Experiment: R2A with Polymyxin B sulfate 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20970 and RR42_RS20975 overlap by 4 nucleotides RR42_RS20975 and RR42_RS20980 are separated by 221 nucleotides
RR42_RS20970: RR42_RS20970 - hypothetical protein, at 32,187 to 33,467
_RS20970
RR42_RS20975: RR42_RS20975 - hypothetical protein, at 33,464 to 34,282
_RS20975
RR42_RS20980: RR42_RS20980 - glycosyl transferase, at 34,504 to 35,676
_RS20980
Position (kb) 33
34
35 Strain fitness (log2 ratio) -2
-1
0
1 at 32.556 kb on + strand, within RR42_RS20970 at 32.676 kb on + strand, within RR42_RS20970 at 32.776 kb on + strand, within RR42_RS20970 at 32.826 kb on + strand, within RR42_RS20970 at 32.826 kb on + strand, within RR42_RS20970 at 32.827 kb on - strand, within RR42_RS20970 at 32.827 kb on - strand, within RR42_RS20970 at 32.827 kb on - strand, within RR42_RS20970 at 32.871 kb on + strand, within RR42_RS20970 at 32.872 kb on - strand, within RR42_RS20970 at 33.000 kb on + strand, within RR42_RS20970 at 33.122 kb on - strand, within RR42_RS20970 at 33.122 kb on - strand, within RR42_RS20970 at 33.147 kb on + strand, within RR42_RS20970 at 33.147 kb on + strand, within RR42_RS20970 at 33.147 kb on + strand, within RR42_RS20970 at 33.148 kb on - strand, within RR42_RS20970 at 33.628 kb on + strand, within RR42_RS20975 at 33.629 kb on - strand, within RR42_RS20975 at 33.687 kb on + strand, within RR42_RS20975 at 33.688 kb on - strand, within RR42_RS20975 at 34.151 kb on + strand, within RR42_RS20975 at 34.151 kb on + strand, within RR42_RS20975 at 34.166 kb on + strand, within RR42_RS20975 at 34.166 kb on + strand, within RR42_RS20975 at 34.167 kb on - strand, within RR42_RS20975 at 34.299 kb on - strand at 34.565 kb on - strand at 34.565 kb on - strand at 34.589 kb on - strand at 34.589 kb on - strand at 34.744 kb on + strand, within RR42_RS20980 at 34.744 kb on + strand, within RR42_RS20980 at 34.768 kb on + strand, within RR42_RS20980 at 34.849 kb on + strand, within RR42_RS20980 at 34.973 kb on - strand, within RR42_RS20980 at 35.055 kb on + strand, within RR42_RS20980 at 35.059 kb on + strand, within RR42_RS20980 at 35.059 kb on + strand, within RR42_RS20980 at 35.059 kb on + strand, within RR42_RS20980 at 35.165 kb on + strand, within RR42_RS20980
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.005 mg/ml remove 32,556 + RR42_RS20970 0.29 -0.1 32,676 + RR42_RS20970 0.38 -0.0 32,776 + RR42_RS20970 0.46 -2.1 32,826 + RR42_RS20970 0.50 +0.7 32,826 + RR42_RS20970 0.50 -0.1 32,827 - RR42_RS20970 0.50 +0.1 32,827 - RR42_RS20970 0.50 +0.2 32,827 - RR42_RS20970 0.50 -1.1 32,871 + RR42_RS20970 0.53 -0.9 32,872 - RR42_RS20970 0.53 -1.7 33,000 + RR42_RS20970 0.63 +0.2 33,122 - RR42_RS20970 0.73 +0.5 33,122 - RR42_RS20970 0.73 -0.1 33,147 + RR42_RS20970 0.75 -0.4 33,147 + RR42_RS20970 0.75 -1.4 33,147 + RR42_RS20970 0.75 -0.2 33,148 - RR42_RS20970 0.75 +0.3 33,628 + RR42_RS20975 0.20 -0.2 33,629 - RR42_RS20975 0.20 -1.2 33,687 + RR42_RS20975 0.27 -0.5 33,688 - RR42_RS20975 0.27 +0.6 34,151 + RR42_RS20975 0.84 +0.3 34,151 + RR42_RS20975 0.84 +0.7 34,166 + RR42_RS20975 0.86 -0.5 34,166 + RR42_RS20975 0.86 -1.0 34,167 - RR42_RS20975 0.86 -1.5 34,299 - -0.2 34,565 - -0.4 34,565 - -0.3 34,589 - +0.1 34,589 - -0.5 34,744 + RR42_RS20980 0.20 +0.5 34,744 + RR42_RS20980 0.20 -0.2 34,768 + RR42_RS20980 0.23 +0.9 34,849 + RR42_RS20980 0.29 +0.2 34,973 - RR42_RS20980 0.40 -0.3 35,055 + RR42_RS20980 0.47 +0.0 35,059 + RR42_RS20980 0.47 -0.7 35,059 + RR42_RS20980 0.47 +0.7 35,059 + RR42_RS20980 0.47 +0.6 35,165 + RR42_RS20980 0.56 -0.5
Or see this region's nucleotide sequence